Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1548 ATGGAGATTTCTCCAGAAACAACAAATCAAAGTGATAATGTAGTGATGAAGAAGAAAGAGACAAGGGGAAGAAAACCAAAACCCAAAGATGATCAACAAACAAAAAGTGCTACAAAGAAACAACAACAACAACAAGAACATGAACCTACGGTGGATGAAAAATACACACAATGGAAGTCCCTTGTTCCTGTTCTTTATGATTGGCTCGCTAATCATAACCTTGTTTGGCCTTCTCTCTCTTGCAGGTGGGGTCCTCAGCTTGAACAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGACTGATGGTAGTGTTCCAAATACTTTGGTCATTGCAAATTGCGAGGTTGTCAAGCCTAGGGTTGCTGCTGCAGAGCACATTTGTCAGTTTAATGAAGAGGCGCGATCCCCATTTGTGAAGAAGTTCAAGACCATCATACATCCCGGAGAGGTGAACAGAATTAGGGAATTGCCACAAAATTCTAAGATAGTGGCTACTCATACTGACAGCCCTGATGTTCTGATTTGGGATGTCGAAAGTCAACCTAATCGTCATGCTGTCCTTGGAGCTGCAAACTCTCGTCCAGATTTGATACTAACTGGACACCAAGATAATGCAGAATTCGCTCTTGCAATGTGCCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAGGACAAATCGGTGGTGTTGTGGAGCATTGCAGACCATATAACTTCTGCTGCAGACCCCACATCTGGTGGCTCAATTGTCAAGCCGGACTCCAAATCTGGGGAAGGCAATGATAAATCGGCTGATTCCCCATCTCTTGGACCTAGAGGTGTCTACTATGGGCATGATGATACTGTTGAAGATGTGGCTTTCTGTCCTTCTAGCGCCCAAGAGTTCTGTAGCGTTGGAGATGATTCTTGTCTCATATTATGGGATGCCCGTACTGGCTCTAGTCCTGTGGTTAAGGTTGAAAAAGCTCATAACGCTGATCTTCATTGTGTTGATTGGAATCCACATGACGTTAATCTGATTCTGACTGGGTCGGCGGATAATTCTGTTTGCATGTTTGATCGCCGCAATCTTACCTCTAATGGAGTTGGGTCTCCTATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCCGAAGATGGTCTCTTAAACCTGTGGGACTATGAGAAGGTGCAGATTCGATCCGATATTGGTAAGAAGATAGAGCGATCTGGAAAACGTGCTCCTCCGGGATTGTTTTTCCAACATGCAGGTCATAGAGACAAAGTGGTTGACTTCCATTGGAATGCATCTGATCCGTGGACGATTGTTAGCGTCTCCGATGACTGTCAAAGTACTAGTGGAGGGGGAACATTGCAGATTTGGCGCATCAGTGATTTGATCTACAGACCTGAAGAGGAGGTTCTGGCAGAACTGGAGAAATTCAAATCTCATGTGGTGGCTTGTGCTTCCAAGTCTGAAAAATGA 1521 0.4458 MEISPETTNQSDNVVMKKKETRGRKPKPKDDQQTKSATKKQQQQQEHEPTVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHICQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIADHITSAADPTSGGSIVKPDSKSGEGNDKSADSPSLGPRGVYYGHDDTVEDVAFCPSSAQEFCSVGDDSCLILWDARTGSSPVVKVEKAHNADLHCVDWNPHDVNLILTGSADNSVCMFDRRNLTSNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNLWDYEKVQIRSDIGKKIERSGKRAPPGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCQSTSGGGTLQIWRISDLIYRPEEEVLAELEKFKSHVVACASKSEK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1548 506 PANTHER WD40 REPEAT FAMILY 28 503 - -
Lal4g1548 506 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 53 119 IPR022052 -
Lal4g1548 506 Gene3D - 29 492 IPR015943 GO:0005515
Lal4g1548 506 SUPERFAMILY WD40 repeat-like 149 495 IPR036322 GO:0005515
Lal4g1548 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 407 - -
Lal4g1548 506 Pfam WD domain, G-beta repeat 200 235 IPR001680 GO:0005515
Lal4g1548 506 Pfam WD domain, G-beta repeat 366 405 IPR001680 GO:0005515
Lal4g1548 506 Pfam WD domain, G-beta repeat 324 356 IPR001680 GO:0005515
Lal4g1548 506 Pfam WD domain, G-beta repeat 276 311 IPR001680 GO:0005515
Lal4g1548 506 MobiDBLite consensus disorder prediction 244 278 - -
Lal4g1548 506 MobiDBLite consensus disorder prediction 13 53 - -
Lal4g1548 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 320 IPR001680 GO:0005515
Lal4g1548 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 414 IPR001680 GO:0005515
Lal4g1548 506 MobiDBLite consensus disorder prediction 1 53 - -
Lal4g1548 506 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 28 503 - -
Lal4g1548 506 SMART WD40_4 427 474 IPR001680 GO:0005515
Lal4g1548 506 SMART WD40_4 365 405 IPR001680 GO:0005515
Lal4g1548 506 SMART WD40_4 141 180 IPR001680 GO:0005515
Lal4g1548 506 SMART WD40_4 316 356 IPR001680 GO:0005515
Lal4g1548 506 SMART WD40_4 195 235 IPR001680 GO:0005515
Lal4g1548 506 SMART WD40_4 271 311 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1548 Lal-Chr4 19654280 19660563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1548 222 411 Miscellaneous Gene Families AT5G08390 25.126 3.85e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1548 K10752 - gmx:100779302 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1548 4 19654280 19660563 Lal4g1548 4 19654280 19660563 ECH