Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1527 ATGGCTTCAGTGTACATACCAGTGCAAAATTCTGAGGAAGAGGTTAGGGTTTCTCTCGATCAGCTTCCAAGGGATGCTTCCGATATACTCGACATTCTCAAAGCTGAACAAGCCCCTCTCGATCTCTGGCTCATCATCGCGAGAGAGTACTTCAAGCAGGGGAAAGTTGATCAATTTCGCCAGATCTTGGAGGAAGGGTCCAGCCCTGAAATTGATGAATATTATGCTGATGTTAGATATGAGAGGATTGCTATCTTGAATGCCCTTGGGGCATACTATAGCTATCTTGGAAAAATAGAGACGAAACAAAGGGAAAAGGAGGAACATTTCATTTTGGCCACACAATATTACAACAAAGCATCAAGAATCGACATGCATGAGCCTTCCACTTGGATTGGGAAAGGTCAGCTTTTGCTGGCAAAGGGTGAAGTAGAACAGGCATCAGCTGCATTTAAGATTGTGTTAGATGGAGACCGTGATAATGTTCCCGCTCTTCTGGGCCAGGCATGTGTTGAGTTCAACCGTGGACGATATTCTGATTCACTTGAGTTGTATAAGAGGGCATTGCAAGTATATCCAGATTGCCCTGCACCTGTGAGACTTGGCATAGGTCTATGCCGCTACAAATTAGGTCAATTTGAAAAGGCTCAGCAGGCTTTTGAGCGTCTCGATCCAGAAAACGTTGAGGCTCTTGTTGCACTTGCAATAATGGACTTACGGACTAATGGAGCTGCTGGAATTAGGACAGGAATGGTTAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTTTTCTTTACTGGTCAGCATTTTTTAGTAGAGCAACTGACTGAAACTGCATTAGCGGTTACCAATCATGGTCCAACAAAGTCTCACTCTTATTATAATTTAGCACGCTCTTACCACAGCAAGGGGGACTATGACAAAGCTGGGGTGTTTTACATGGCATCTGTCAAGGAAGTCAACAAGCCCCATGAATTTGTGTTTCCGTATTATGGTTTGGGACAAGTGCAATTAAAGTTGGGAGATTTTAGAAGTGCACTCTCAAACTTTGAAAAGGTTTTGGAGCTGTACCCGGATAATTGTGAGACTTTGAAAGCACTTGGGCACATTTATGTTCACCTTGGCCAGACTGACAAGGGCCAGGACTTTATTAGGAAAGCTACAAAAATTGATCCTCGTGATGCTCAGGCATTTCTTGAACTGGGAGAATTGTTAATCCTTTCTGACACAGGAGCTGCGCTAGATACATTCAAAACCGCTCGTACTCTTTTTAAGAAGGGTGGTCAAGCAGTACCAATTGAATTACTCAATAATATTGGTGTGCTTCAGTTTGAAAGGGGAGAGTTTGAGCTTGCTCAGCAGACTTTTAAGGAGGCTCTAGGTGATGGGATATGGCTTTCTTTTATTAACAAGGAAAATAAGCCTTCTGTTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGCAGTTATTTCATGACCTTGAAAGTAGTGGTCACCATGTGGAAGTACCTTGGGATAAAGTCACAGTACTCTTTAACCTGGCTAGATTACTTGAGCAATTAAATGAATCTGGAACTGCAAGCATTTTGTATCGCCTAATCTTGTTCAAGTACCCAGATTATGTTGATGCATATCTGAGGCTAGCCGCTATTGCAAAGGCTCGGAACAACATTCTCTTAAGCATTGAACTGGTTAATGATTCCCTGAAGGTGAATGACAAGTGTCCAAATGCACTATCTATGCTTGGCGAGTTGGAGTTAAAAAATGATGATTGGGTGAAGGCGAAAGAAACTCTCCGAGCAGCTAGTGATGCAACCGAGGGGAAGGACTCATATGCTACTCTTTCTCTAGGAAACTGGAACTACTTTGCAGCAGTTCGCAATGAGAAGAGAAATCCAAAACTAGAAGCCACTCACTTGGAAAAGGCCAAGGAACTTTATACAAGAGTTCTGATTCAGCATTCTGCTAATCTTTATGCTGCCAACGGTGCTGGGGTAGTCTTAGCAGAAAAAGGCCATTTTGATGTTTCAAAGGATATCTTCACACAGGTTCAAGAAGCTGCAAGTGGCAGTGTTTTTGTCCAGATGCCGGATGTTTGGATAAATTTGGCACATTACCAGAATTGCCTACGGAAGTTCTATCATAACACAGACTCACAAATACTTCTATATTTAGCTCGTACCCATTATGAAGCTGAACAGTGGCAAGATTGTATAAAAACTCTACTGAGAGCCATTCATTTGGCACCCTCAAACTATACGTTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACGCTTCAAAAGGCAAAGAGGACCGCAGATGAGGTGAGAACAACTGTTGCAGAGCTGCAAAATGCTGTTCGAATATTTAGTCAGTTGTCTGCTGCTTCCAACCTACATATTCATGGATTTGATGAGAAGAAAATTGACACTCATGTTGGATATTGTAACCACTTACTTTCGGCCGCTAAAGTCCATCTTGAAGCAGCTGAGCATGAGGAGCAGCAAGTACGACATACACAAGAACTTGCTCGTCAGGTGGAACTGGCTGAGGCAAAACGGCGAAAGGCTGAAGAGGATTCAAAATTTCAGCTTGAAAGGAGAAAGCAAGAGGAAGAGTTAAGGCGAGTGCAACAACAGGAGGAGCATTTTAAGCGTGTCAGGGAGCAATGGAAGAGCAGTTCACACTCGAAACGGAGGGAAAGGTCGGACGATGAAGAAGGCGGGACTAATGAGAAGAGAAGAAGAAAAAGTGGAAAGAAGAGAAAGAAGGATAAGCACTCAAAATCACACTATGACACAGAAGAAACAGAAGGTTATATGGTGGATGAACAGGAAATCGCAGATGGAGATGCTGACATAAATGACAGAGAACCCCAAATGAACGATGATGCTGAGGAAAATGCACAGGATCTTCTTGCAGCAGCTGGACTTGAAGATTCTGACGCAGAAGATGAGATGGCTGCACCTTCCTCATCCATAGCACGGCGGAGGCAAGCATTATCAGAATCTGATGATGATGAACCATTAATGAGACAATCAAGTCCTCCAATAAGGGAAAATTCAACTGATATGCACCAGCTGGAGAGTGATGGAGAAATAAGGGATAAGACAAATGGGGACAATGCTAGTGAAGAGGAGTAG 3198 0.4293 MASVYIPVQNSEEEVRVSLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVDQFRQILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWIGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALQVYPDCPAPVRLGIGLCRYKLGQFEKAQQAFERLDPENVEALVALAIMDLRTNGAAGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVFYMASVKEVNKPHEFVFPYYGLGQVQLKLGDFRSALSNFEKVLELYPDNCETLKALGHIYVHLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDTFKTARTLFKKGGQAVPIELLNNIGVLQFERGEFELAQQTFKEALGDGIWLSFINKENKPSVDAATSTLQFKDMQLFHDLESSGHHVEVPWDKVTVLFNLARLLEQLNESGTASILYRLILFKYPDYVDAYLRLAAIAKARNNILLSIELVNDSLKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATEGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRTTVAELQNAVRIFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRHTQELARQVELAEAKRRKAEEDSKFQLERRKQEEELRRVQQQEEHFKRVREQWKSSSHSKRRERSDDEEGGTNEKRRRKSGKKRKKDKHSKSHYDTEETEGYMVDEQEIADGDADINDREPQMNDDAEENAQDLLAAAGLEDSDAEDEMAAPSSSIARRRQALSESDDDEPLMRQSSPPIRENSTDMHQLESDGEIRDKTNGDNASEEE 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1527 1065 Coils Coil 858 908 - -
Lal4g1527 1065 SUPERFAMILY TPR-like 262 472 IPR011990 GO:0005515
Lal4g1527 1065 SUPERFAMILY TPR-like 107 281 IPR011990 GO:0005515
Lal4g1527 1065 Pfam Tetratricopeptide repeat 350 409 - -
Lal4g1527 1065 Gene3D Tetratricopeptide repeat domain 501 648 IPR011990 GO:0005515
Lal4g1527 1065 ProSiteProfiles TPR repeat region circular profile. 339 372 - -
Lal4g1527 1065 Coils Coil 784 804 - -
Lal4g1527 1065 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Lal4g1527 1065 Pfam Tetratricopeptide repeat 134 194 - -
Lal4g1527 1065 ProSiteProfiles TPR repeat profile. 373 406 IPR019734 GO:0005515
Lal4g1527 1065 MobiDBLite consensus disorder prediction 871 932 - -
Lal4g1527 1065 MobiDBLite consensus disorder prediction 1042 1065 - -
Lal4g1527 1065 SUPERFAMILY TPR-like 650 811 IPR011990 GO:0005515
Lal4g1527 1065 Gene3D Tetratricopeptide repeat domain 649 807 IPR011990 GO:0005515
Lal4g1527 1065 MobiDBLite consensus disorder prediction 871 1065 - -
Lal4g1527 1065 Gene3D Tetratricopeptide repeat domain 8 333 IPR011990 GO:0005515
Lal4g1527 1065 Gene3D Tetratricopeptide repeat domain 334 496 IPR011990 GO:0005515
Lal4g1527 1065 ProSiteProfiles TPR repeat profile. 339 372 IPR019734 GO:0005515
Lal4g1527 1065 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1033 IPR031101 GO:0006355|GO:0016570
Lal4g1527 1065 MobiDBLite consensus disorder prediction 1017 1031 - -
Lal4g1527 1065 SUPERFAMILY TPR-like 446 700 IPR011990 GO:0005515
Lal4g1527 1065 Pfam Tetratricopeptide repeat 200 223 IPR019734 GO:0005515
Lal4g1527 1065 Pfam Tetratricopeptide repeat 303 330 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 162 195 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 521 554 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 589 622 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 555 588 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 732 765 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 339 372 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 373 406 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 302 335 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 445 485 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 128 161 IPR019734 GO:0005515
Lal4g1527 1065 SMART tpr_5 197 227 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1527 K15176 - gmx:100794371 1874.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1527 4 19379832 19393821 Lal4g1527 4 19379832 19393821 ECH