Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1450 ATGGCTTCAACATCACTCTCATCTTCTTCTTCTTCTTCTTCCATCTTTCGCTATACCAAATCCAACCCAATAACCCAAGACCCAAACTTTCGGGTTACCCACTTCTCAATTTCAGCTCCACCATCAAAAACTGCTTCTACTTCTTCCAATGAAAGTGATTTTCGTAGTATCTCAGAAACAACGTTGAGGAACAACAATAATCCTAAGGCTGGGGCCCACACTCTCCCCGAAGTATTCTCATATTGTATTCAGAGGAAGCATTGGCTTAAAGCTCTTGAGTTATTTGACATGCTTAGAGAGCAACCCTATTACGAACCCAAAGAAAAGACTTACATGAAACTCATTGTGTTGCTTGGGAAATCTGGTCAACCCCATCATGCTCACCAGCTTTTTAACACTATAAAAGAAGATGGTTGTGAAAGTACTCAACTTTACACAGCCTTACTTGCAGCATATTGTCGGAATAGCTTGATCGGTGAGGCATTTTCGACTCTCGATGAGATGAAGCAACTCCCTCACAGCCAACCTGACGTTGTCACTTACAGTACCTTGATAAAAGCTTGCGTGGATGCTTTGAAAATCGAACAGGTTGAGTTGCTATATGAAGAAATGGTTGAAAAATCCATGGTACCGGAAACTGTCACTCATAACATTGTTCTGAGTGGTTATGGTAAGTCGGGGTGGTTTGACAAGATGGAGAAAATGCTGTCAAGTATGATGGAGAGCACTAAATGCAAGCCTGATATTCGGACAATGCACACAGTCATCAGTGTCTTTGGTAATAAGGGTCGAGTTGATCTGATGGAGAAATGGTATGAGAAATTCTGTGATTTCGGGATACAACCAGAAACCCGCACTTTTAATATTTTGATTGGAGCTTATGGGAAGAAAGGAATGTATGAAAAAATGTCATCTGTTATGCAGTCTATGCGCAAGTTACAATGTCCATGGACTACCTCAACGTATAACAGTTTGATTGAGGCATTCGCAGCCGAAGGTGATGCTAAAAACATGGAGTATACATTTGATCAGATGCGCGCCGAGGGTATGAAAGTAGATACTAAGACTTTTTGCTGCCTTATTAATGGTTATGCTAATGCTGGTATCTTCCATAAAGTAAATAGCATTGTTCAATTGGCTGCGAGGTTTCAGATACCCGAGAATACTTCGTTTTATAATGCGGTCATATCTGCATGTGCGAAGGCAGAGGATTTGACGGAAATGGAAAGAATTTTCAAGCGTATGAAAGAAAAACGATGTCAACCAGATGAAATGACATACTCTATCTTGGTTGAGGCATACAAAAAGGAAGGTATGGATGATAAGATATACTCTTTGGAACAGTAA 1347 0.4046 MASTSLSSSSSSSSIFRYTKSNPITQDPNFRVTHFSISAPPSKTASTSSNESDFRSISETTLRNNNNPKAGAHTLPEVFSYCIQRKHWLKALELFDMLREQPYYEPKEKTYMKLIVLLGKSGQPHHAHQLFNTIKEDGCESTQLYTALLAAYCRNSLIGEAFSTLDEMKQLPHSQPDVVTYSTLIKACVDALKIEQVELLYEEMVEKSMVPETVTHNIVLSGYGKSGWFDKMEKMLSSMMESTKCKPDIRTMHTVISVFGNKGRVDLMEKWYEKFCDFGIQPETRTFNILIGAYGKKGMYEKMSSVMQSMRKLQCPWTTSTYNSLIEAFAAEGDAKNMEYTFDQMRAEGMKVDTKTFCCLINGYANAGIFHKVNSIVQLAARFQIPENTSFYNAVISACAKAEDLTEMERIFKRMKEKRCQPDEMTYSILVEAYKKEGMDDKIYSLEQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1450 448 PANTHER OS03G0309800 PROTEIN 49 448 - -
Lal4g1450 448 Pfam PPR repeat family 388 434 IPR002885 -
Lal4g1450 448 Pfam PPR repeat family 144 189 IPR002885 -
Lal4g1450 448 Pfam PPR repeat family 319 366 IPR002885 -
Lal4g1450 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Lal4g1450 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Lal4g1450 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Lal4g1450 448 Gene3D Tetratricopeptide repeat domain 73 239 IPR011990 GO:0005515
Lal4g1450 448 Gene3D Tetratricopeptide repeat domain 317 448 IPR011990 GO:0005515
Lal4g1450 448 MobiDBLite consensus disorder prediction 35 69 - -
Lal4g1450 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Lal4g1450 448 Pfam PPR repeat 214 242 IPR002885 -
Lal4g1450 448 Pfam PPR repeat 110 139 IPR002885 -
Lal4g1450 448 Pfam PPR repeat 251 280 IPR002885 -
Lal4g1450 448 Pfam PPR repeat 286 315 IPR002885 -
Lal4g1450 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
Lal4g1450 448 PANTHER ATPASE EXPRESSION PROTEIN 3 49 448 - -
Lal4g1450 448 Gene3D Tetratricopeptide repeat domain 240 316 IPR011990 GO:0005515
Lal4g1450 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 247 IPR002885 -
Lal4g1450 448 TIGRFAM PPR: pentatricopeptide repeat domain 179 211 IPR002885 -
Lal4g1450 448 TIGRFAM PPR: pentatricopeptide repeat domain 145 170 IPR002885 -
Lal4g1450 448 TIGRFAM PPR: pentatricopeptide repeat domain 110 140 IPR002885 -
Lal4g1450 448 TIGRFAM PPR: pentatricopeptide repeat domain 214 249 IPR002885 -
Lal4g1450 448 TIGRFAM PPR: pentatricopeptide repeat domain 286 317 IPR002885 -
Lal4g1450 448 TIGRFAM PPR: pentatricopeptide repeat domain 392 424 IPR002885 -
Lal4g1450 448 TIGRFAM PPR: pentatricopeptide repeat domain 321 354 IPR002885 -
Lal4g1450 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1450 106 443 Glycosyltransferase AT1G05670 23.599 2.70e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1450 - - pmum:103323280 590.882