Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1441 ATGAATTTCAGATTCCAGAACCTTCTAGGTGCTCCTTACAGAGGTGGCAATGTCGTAATTTCCAACAACACTCTGTTAATCTCACCCATCGGTAACCGTGTCTCCATCACCGACCTTCTCAAATCTCAAACCACAACCCTTCCTTTTCAATCTTCCTCCAACATCTCCCGCATCGCCGTTTCCCCCGATGGCACCTTCCTCCTCGCCGTCGACGACCGCAACCGCTGCCAGTTCGTCAACCTCCGCCGCCGTGTTGTCCTCCACCGTATCACCTTCAAGCACCGTGTCGCCGCTGTCAAATTCAGCCCCGATGGGTCCCTTATCGCTGTTGCCGCCGGTAATCTTGTTCAGATATGGCGGTCGCCAGGGTTCAGGAGGGAGTATTTTGGGTTTGAGTTGGTTCGGACTTTCGCCGATTTTCATAGTAAAGTTACAGCCTTTGATTGGAGTCCTGATTCGAATTACTTGCTTGTTGGGTCTAAGGATTTAACTGCTAAAATATTGTATTTGAAAAAAGTGAGTAATGGTGTTAGGTATAGTCCTTTTTCGCTTTTAGGGCATAGGGATTCGGTTATAGGTTCATTTTTCGGCGTTGATGCGAAAACTAATAGGGTTCGTAAGGCTTATACGGTTACTAGGGATGGTTATGTGTATAGTTGGGGTTTTACTGCTGATAATGAAGGTTTTAGTGTGATGGATGAGGATGAGGGATCGGAGCCGGTTTCACCCGGAACACCGATGAGGGATGTGGAAGGGAATTTGGAGAGTGGTGGTGATGTTGAAGTGAAGAAGAGAAAGAAATTGGGGAATGGGGATGAGGGTTTGGTTGTTGAAGATGAGTATTTGTGTAGAGGGAAATGGGAGATGTTGAGGAAGGATTGTTTTACTCAGGCACCTGCGAAGGCAACGGCGTGTGATTTTCATAGAGGGCTAGATATGGTTGTTGTTGGCTTCTCGAGTGGTGTGTTCGGGTTGTATCAGATGCCGGAATTTGTGTGTATTCACTTGTTGTCTATATCGAGGGAGAAGATTACCACTGCGCTTTTTAATGAGCTTGGAAATTGGTTGACTTTCGGCTGTGCGAAACTGGGCCAGTTGCTTGTGTGGGAGTGGAGGTCCGAGAGTTACATTTTGAAGCAGCAGGGTCATTACTTTGACGTGAATTGTGTTGCGTATTCACCAGACTCACAACTCCTTGCTACTGGAGCAGATGATAATAAAGTGAAGGTGTGGACAGTTTCTTCAGGTTTTTGCTTTGTTACGTTTTCTGAGCACACTAATTCTGTTACCGCTCTACATTTTACGGCAAGTAACAATTGCCTGCTTAGTGCATCTCTTGATGGCACCGTTCGAGCGTGGGATTTAATACGTTATCGAAACTTTAAGACATTTACAACCCCTTCTTCGAGACAGTTTGTTTCTTTGGCAGCAGATCAGAGTGGTGAAGTGATATGTGCCGGCACTTCAGATTCCTTTGAGGTTTTTGTTTGGTCAATGAGAACTGGCCGTTTGTTAGATGTGCTTAGTGCTCATGAGGGTCCTGTCCATGGGTTGATGTTTTCACCTACAAATGCTATCTTGGCCTCGTCGTCATGGGACAAAACTGTTAGACTGTGGGATGTCTTTAATGGAAAAGGATCAGTTGAAACATTGACTCACACGCATGACGTTCTCACGGTAGTTTATCGTCCAGATGGAAGGCAGTTAGCGTGCAGCACATTAGATGGCCAAATTTATTTTTGGGATCCAATAGATGGTTTGCTGATGTACACCATCGAAGGTGCTAGAGATATTGCTGGAGGGCGTCTTATGACTGACCGCAGATCGGCTAAGAACTCAACTCAAGGGAAGTACTTCACAACCTTATGTTATTCAGCTGATGGAAGCTACATTTTAGCTGGAGGAAGTAGCAGATATATCTGCATGTATGATGTTGGAGATCAGGTATTGCTGCGACGTTTCCAGATAACTCACAATCTCTCTATAGATGGAGTGCTTGACTTTTTAAACTCAAAGAATATGACAGATACTGGTCCGCTAGAGTTGATTGATGATGATAACAGTGACATTGAAGATGGCCTTGACAAACAAACAAGAGGTAAACTTGGTCTTGATTTACCAGGAGCCTTGCCCAACCGTGGAAGGCCTGTCATTCAAACAAAAGGCTTGAGAATTGCACCTACTGGCCGGAGTTTTGTAGCAGCAACAACTGAGGGAGTTTTAGTTTATTCTGTTGACGATTCATTCATATTTGACCCAACTGACCTTGACATCGATGTTACACCAGAGGCTGTTGATGAGGCTCTTAGTGAAAATCAACCAAGTAGAGCTTTGATCCTTAGTCTTCGCTTAAATGAGGACTCTTACATTAAAAAATGTATTTTTGCTGTTAGCCCACTTGATATTCCAGCCGTAACCACATCAATCCCTTCCAGATATCTCCAGCGATTAATCGAAGCACTCGCAGATCTTCTAGAAAATTGCCCACATCTAGAATTTATACTTAGATGGTCTCAGGAGCTTTGCAAAGCCCATGGGAACTCCATTCAACAGAATTCTAGAAATCTGCTCCCATCATTAAAATCTTTGCAGAAATCAATCACTAGGATACATCAGGATCTGGCTGATACATGCTCCTCCAATGAATATATGCTGCAATATTTATGCTCTTCTTCTGCAGCCAAGAAATGA 2691 0.4426 MNFRFQNLLGAPYRGGNVVISNNTLLISPIGNRVSITDLLKSQTTTLPFQSSSNISRIAVSPDGTFLLAVDDRNRCQFVNLRRRVVLHRITFKHRVAAVKFSPDGSLIAVAAGNLVQIWRSPGFRREYFGFELVRTFADFHSKVTAFDWSPDSNYLLVGSKDLTAKILYLKKVSNGVRYSPFSLLGHRDSVIGSFFGVDAKTNRVRKAYTVTRDGYVYSWGFTADNEGFSVMDEDEGSEPVSPGTPMRDVEGNLESGGDVEVKKRKKLGNGDEGLVVEDEYLCRGKWEMLRKDCFTQAPAKATACDFHRGLDMVVVGFSSGVFGLYQMPEFVCIHLLSISREKITTALFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFSEHTNSVTALHFTASNNCLLSASLDGTVRAWDLIRYRNFKTFTTPSSRQFVSLAADQSGEVICAGTSDSFEVFVWSMRTGRLLDVLSAHEGPVHGLMFSPTNAILASSSWDKTVRLWDVFNGKGSVETLTHTHDVLTVVYRPDGRQLACSTLDGQIYFWDPIDGLLMYTIEGARDIAGGRLMTDRRSAKNSTQGKYFTTLCYSADGSYILAGGSSRYICMYDVGDQVLLRRFQITHNLSIDGVLDFLNSKNMTDTGPLELIDDDNSDIEDGLDKQTRGKLGLDLPGALPNRGRPVIQTKGLRIAPTGRSFVAATTEGVLVYSVDDSFIFDPTDLDIDVTPEAVDEALSENQPSRALILSLRLNEDSYIKKCIFAVSPLDIPAVTTSIPSRYLQRLIEALADLLENCPHLEFILRWSQELCKAHGNSIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSSSAAKK 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1441 896 CDD WD40 333 594 - -
Lal4g1441 896 Gene3D - 22 258 IPR015943 GO:0005515
Lal4g1441 896 ProSitePatterns Trp-Asp (WD) repeats signature. 441 455 IPR019775 -
Lal4g1441 896 SUPERFAMILY WD40 repeat-like 128 588 IPR036322 GO:0005515
Lal4g1441 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 549 IPR001680 GO:0005515
Lal4g1441 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 582 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 415 454 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 83 120 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 373 412 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 130 169 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 501 540 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 330 370 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 40 80 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 457 498 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 544 582 IPR001680 GO:0005515
Lal4g1441 896 SMART WD40_4 605 644 IPR001680 GO:0005515
Lal4g1441 896 Gene3D - 492 676 IPR015943 GO:0005515
Lal4g1441 896 Pfam Dip2/Utp12 Family 785 890 IPR007148 -
Lal4g1441 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 550 582 - -
Lal4g1441 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 508 541 - -
Lal4g1441 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 455 - -
Lal4g1441 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 463 IPR001680 GO:0005515
Lal4g1441 896 Gene3D - 292 491 IPR015943 GO:0005515
Lal4g1441 896 SUPERFAMILY WD40 repeat-like 551 745 IPR036322 GO:0005515
Lal4g1441 896 PRINTS G protein beta WD-40 repeat signature 399 413 IPR020472 -
Lal4g1441 896 PRINTS G protein beta WD-40 repeat signature 441 455 IPR020472 -
Lal4g1441 896 PRINTS G protein beta WD-40 repeat signature 527 541 IPR020472 -
Lal4g1441 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 421 IPR001680 GO:0005515
Lal4g1441 896 SUPERFAMILY DPP6 N-terminal domain-like 21 235 - -
Lal4g1441 896 MobiDBLite consensus disorder prediction 233 255 - -
Lal4g1441 896 Pfam WD domain, G-beta repeat 554 582 IPR001680 GO:0005515
Lal4g1441 896 Pfam WD domain, G-beta repeat 418 454 IPR001680 GO:0005515
Lal4g1441 896 Pfam WD domain, G-beta repeat 381 411 IPR001680 GO:0005515
Lal4g1441 896 Pfam WD domain, G-beta repeat 133 167 IPR001680 GO:0005515
Lal4g1441 896 Pfam WD domain, G-beta repeat 503 540 IPR001680 GO:0005515
Lal4g1441 896 ProSitePatterns Trp-Asp (WD) repeats signature. 527 541 IPR019775 -
Lal4g1441 896 PANTHER WD40 REPEAT PROTEIN 1 894 IPR027145 -
Lal4g1441 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 380 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1441 Lal-Chr4 18595926 18601037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1441 479 678 Miscellaneous Gene Families AT5G08390 24.378 3.25e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1441 K14558 - gmx:100526905 1513.05