Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1438 ATGGATCAACACGAGGATGAATGCCGCATCGAAGGCCAAAGTACCAGCAAACAAGATGACGAGGAAGCTGTTTCTCGCCTCGAGGAAATAAAAAAATCAATAGAGGCTAAGATGGCTTTACGTCAAAGCAATTTGAACCCCGAGAGGCCTGACGCAGGATTTTTAAGGACATTGGATTCTAGCATTAAGCGCAACACTGCAGTTATTAAGAAACTGAAGCAGATTAATGAAGAGCAGCGTGATGCACTGATGGATGAGTTACGAGGTGTCAACTTAAGCAAATTTGTCAGTGAAGCTGTGGCATCTATATGTGATGCCAAGCTTAGAAGTGCAGATATACAAGCAGCAGTTCAGATCTGTTCTTTGCTTCATCAAAGGTACAAGGACTTCACGCCAAGCCTGATTCAAGGGCTTCTCAAAGTCTTCTCTCCTGGAAAACCCGGTGATGAATCAGATGCAGATAAAAACTTGAAGGCAATGAAGAAGCGTAGTAGTCTGAAACTTCTGTTGGAACTTTATTTTGTTGGAGTTATTGAAGATGGTGCCATTTTCATCAATACCATAAAGGATCTTACCAGTGCAGAACAGCTAAAAGATCGGGATGCTACACAAACAAGTTTGACCCTACTTTCTAGCTTTGCTCGGCAAGGGAGAATTTTTATAGGACTTTCTGTTACTGGGCCAGAAATTCACGAGGAGTTTTTTAAAGGTCTTAACATCACGACAGATCAAAAGAAAGCTATACGGAAAGCATGTTATTCATTTTATGATACTGCAGCTGAACTACTTCAGTCTGAGCATTCTTCACTTAGATTAATGGAGCATGAAAATTCTAAAATTCTTAATGCAAAAGGAGAGCTCAGTGATGAAAATATCGCTTCATATGAAAAGCTTCGTAAATCCTATGACCAGTTGTATCGTAATGTCTCTTCATTAGCAGAAGCGCTTGATATGCAGCCTCCTGTGATGCCCGAGGATGGCCACACAACAAGGGTTACTAGTGGTGAGGAGGCTATTTCTTCTGGTGCTGGGAAAGATTCTCCTGTCGCTGAACCTATATGGGATGATGAAGATACAAGGGCTTTCTATGAAAGTTTACCTGATCTTAGAGCTTTTGTTCCTGCTGTGCTTTTGGGAGAAACAGAGCTAAAAACCAGTGAGCAATCTGTGAAGAGTCAAGACCAACCAACTGAAATTGTACCTGAATCAGACAAAGGTCAACTAGCCACCTATGGAAGTGGAGAGGTCTCCACAGAGTCTAATGCTTTGCCGGAGGGAGAAAGCACAGAAAGAGTGAAGGATAAGGAAGAAAAAGAAAAGTATAAAGAATTGGACAAGGAGAAGGAAAAAGAAAAAGATAATGACAAAAAAGGGGAACATGAAAAAGATAAACTCAGAAGTCTTGAAGGGACAAATTTGGATGCTTTACTGCAGAGGCTTCCGGGTTGTGTGAGCAGGGACCTTATAGATCAATTGACTGTAGAATTCTGTTATCTAAATTCAAAATCAAATCGGAAAAAACTTGTGAGGGCTTTGTTCAATGTACCGAGGACATCTCTGGAGCTTCTACCATATTACTCACGCATGGTTGCCACACTCTCAACTTGTATGAAGGATATCTCCACAATTCTCTTGCAGATGTTGGAGGAGGAGTTCAACTTCTTAATAAATAAAAAGGACCAGATGAACATTGAGACTAAGATAAGAAATATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTGCCCCTGCTAGCTTTGTTTTCATTTGTTTGAAGGCCTGTTTAGATGATTTTACTCATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTATATCGGTCTCCAGAAACTACTATACGTATGGCTAACATGTTGGAAATACTAATGCGCTTGAAAAATGTGAAAAACTTGGATCCCAGACACAGTACTTCAGTGGAGAATGCATACTATCTTTGCAAGCCACCAGAAAGATCTGCACGAGTAGCTAAAGTTCGTCCTCCGTTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGATAAGTCTACCATCGAGCATGTGCTGAGGCAACTTCGTAAGTTACCATGGAGTGAATGTGAACCATATCTTTTGAAATGCTTCATGAAGGTCCACAAAGGGAAATATGGTCAGATCCACCTGCTTGCTTCTCTTGCTGCTGGGTTAAGTCGCTATCATGATGAGTTTGCAGTAGCTATTGTTGATGAGGTTTTGGAGGAGATTAGACTTGGGCTGGAATTAAATGACTATGGGATGCAGCAAAGACGCATTGCCTACATGCGGTTCTTAGGGGAGCTTTACAACTATGAGCATGTAGACTCATCTGTTATTTTCGAGACACTATATCTCATTCTTATATATGGTCACGGGACACCAGAGCAAGATGCACTGGATCCACCGGAAGATTTTTTTCGTATAAGGTTGATTGCTACCCTTCTTGAAACTTGTGGGCATTACTTTGACCGTGGCTCTTCTAAGAGGAAACTTGACCGGTTCCTTATACACTTCCAGAGGTATATTTTAAGCAAAGGTGCATTGCCCTTGGACGTCGAATTTGACTTGCAGGATATGTTTGCAGACTTGCGCCCGAATATGGTTCGATACACATCTATTGAGGAAGTGAATGCAGCTCTAGTAGAACTTGAGGAACATGATCGTATAGTTTCCGTGGATAAGGCCAGCAGTGAAAAACATTCTGACACTGAGAAAACTCCAAGTAGGACCAGTTCCAAAAATGTGGTAGGTGATGGACAGAGCATTGATAATGGTGCAGAAGAAATTGGAGTGCGAGATGATGCTAATGATAGTGAGACTGATTCACAGAGTGATGCAGTTGATGTAGAGGGTCATGACAATGAAGAGTTGGATGAGGAGAATCATGATGATGGTTGTGAGACCGAGGATGAAGATGATGATGGTGATAATGAGCTTGTACCTGCTTCTGATGATGAAGATGAAGTCCATGTGAGACACAAGATGACAAAGGTGGACCCTCTCGAGGAAGCTAATTTTGATCAGGAGCTCAAGGCTTTAGTAAAGGAGAGTATGGAAGAGCGAAGCCGGGATCTACGTGGCCGTCCTACACTGAATATGATGATTCCAATGAATGTACTTGAGGGATCCACCAAGGATCATCATGGGAGAGGAATTAGTGGGGAAAGTGGTGATGAGGCATTGGATGATGAGAGTGGTGAGAACAAAGAGGTTCAGGTGAGAGTTCTCGTGAAGCGTGGGAACAAGCAACAAACAAAGCAGATGTTCATTCCGCAGAATTCCTCACTGGTGCAGAGTACAAAACAGAAAGATGCAGCTGAGCTTCAAGAAAAAGAGGATATTAAGAGGCGTGTTTTGGAGTACAATGATAGAGAAGAGGAGGAGCTTAATGGATTAGGGACCCAGCCAACTTACTGGCTGCAAAGTGGAGGTAGCAAGACTGGTGGCCGTGGACACACTTTTGAAGGAACCAGTGGCAGGGGTGGTGGATCACGGCAACGACATCATAATTATTATACTGGTAGTGGACCCTACTATAGCAGAAGAAGGTGA 3588 0.4217 MDQHEDECRIEGQSTSKQDDEEAVSRLEEIKKSIEAKMALRQSNLNPERPDAGFLRTLDSSIKRNTAVIKKLKQINEEQRDALMDELRGVNLSKFVSEAVASICDAKLRSADIQAAVQICSLLHQRYKDFTPSLIQGLLKVFSPGKPGDESDADKNLKAMKKRSSLKLLLELYFVGVIEDGAIFINTIKDLTSAEQLKDRDATQTSLTLLSSFARQGRIFIGLSVTGPEIHEEFFKGLNITTDQKKAIRKACYSFYDTAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDQLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAISSGAGKDSPVAEPIWDDEDTRAFYESLPDLRAFVPAVLLGETELKTSEQSVKSQDQPTEIVPESDKGQLATYGSGEVSTESNALPEGESTERVKDKEEKEKYKELDKEKEKEKDNDKKGEHEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDISTILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPASFVFICLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTSVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSECEPYLLKCFMKVHKGKYGQIHLLASLAAGLSRYHDEFAVAIVDEVLEEIRLGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILIYGHGTPEQDALDPPEDFFRIRLIATLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDVEFDLQDMFADLRPNMVRYTSIEEVNAALVELEEHDRIVSVDKASSEKHSDTEKTPSRTSSKNVVGDGQSIDNGAEEIGVRDDANDSETDSQSDAVDVEGHDNEELDEENHDDGCETEDEDDDGDNELVPASDDEDEVHVRHKMTKVDPLEEANFDQELKALVKESMEERSRDLRGRPTLNMMIPMNVLEGSTKDHHGRGISGESGDEALDDESGENKEVQVRVLVKRGNKQQTKQMFIPQNSSLVQSTKQKDAAELQEKEDIKRRVLEYNDREEEELNGLGTQPTYWLQSGGSKTGGRGHTFEGTSGRGGGSRQRHHNYYTGSGPYYSRRR 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1438 1195 MobiDBLite consensus disorder prediction 1096 1121 - -
Lal4g1438 1195 Pfam MIF4G domain 679 873 IPR003890 GO:0003723|GO:0005515
Lal4g1438 1195 Pfam MIF4G domain 477 661 IPR003890 GO:0003723|GO:0005515
Lal4g1438 1195 Coils Coil 295 315 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 384 465 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 1171 1185 - -
Lal4g1438 1195 Coils Coil 434 454 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 426 465 - -
Lal4g1438 1195 Gene3D - 431 668 - -
Lal4g1438 1195 SUPERFAMILY ARM repeat 78 196 IPR016024 -
Lal4g1438 1195 PANTHER - 1 1191 - -
Lal4g1438 1195 Coils Coil 545 565 - -
Lal4g1438 1195 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 1 1191 IPR039762 GO:0000184
Lal4g1438 1195 MobiDBLite consensus disorder prediction 903 1003 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 410 425 - -
Lal4g1438 1195 SUPERFAMILY ARM repeat 672 897 IPR016024 -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 1146 1164 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 1138 1195 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 963 995 - -
Lal4g1438 1195 Coils Coil 17 37 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 1 25 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 1055 1069 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 903 919 - -
Lal4g1438 1195 SMART if4_15 677 878 IPR003890 GO:0003723|GO:0005515
Lal4g1438 1195 SMART if4_15 474 662 IPR003890 GO:0003723|GO:0005515
Lal4g1438 1195 SMART if4_15 62 284 IPR003890 GO:0003723|GO:0005515
Lal4g1438 1195 MobiDBLite consensus disorder prediction 1054 1080 - -
Lal4g1438 1195 Gene3D - 672 902 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 384 400 - -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 1096 1115 - -
Lal4g1438 1195 Gene3D - 14 324 - -
Lal4g1438 1195 Pfam Up-frameshift suppressor 2 997 1132 IPR007193 -
Lal4g1438 1195 MobiDBLite consensus disorder prediction 939 962 - -
Lal4g1438 1195 SUPERFAMILY ARM repeat 471 665 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1438 Lal-Chr4 18551377 18566342 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1438 K14327 - gmx:100786092 1981.45