Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1228 ATGGCGGAGAAGGAAATCCAAGTTCGAACCCTAACCGGTGACTCCATCATTCTTCACATCTCTCCCACCGCTACCGTCCACGATCTTAAGCTTCTTCTCATCCACTCCTTTCCACCTGCCACCAACTCCCCTAATTTCCACCTCTTCTCTAAGGCACACTCACTCCCTCCTTCTATTATTACTCTTTCCTTATACTTCAATTTTTATATCATATCTACTTTTCTCGCAACTAGGTTTTACCATAAATATGTCAACTTCACAAAAGGACATAAATTAAGATTGCAGGCTCAGATTGGTTCTTATTCCATCGAACTTGGCGAGTTTCTTGTTTTGGTCCCCTTTACTAAGAAGGAATCAACTCAGGCCAACAAACCGGACCCACTTCAGGCTTCTGTAACTTCCTCGAATGCAACCTCTAATCTTGCTGAATCTACATGGTGCAATATAATGGAGGATTTGTCAAATTTACGTGGTACTACTGATACCGGTCCCTCAAATGCTAATGATGAGGCATCTAATTTTGAGTATTCTGGACCGAGGAAAGAGAAAATGGTGGTGGAGGATACTTGTTCCGATTTTTTTGACCCGAAAACTAAACAAGGTTTTGGTCCTGATAAGCAAATGGAGCTTCCGTATCATCTCATATTAAACACGCTGCAATATACTAGTGAGGGCGTTCTTGGCGAGCATAATTGCGAGGTTTTTTCAAAGGTTTTGGAGCCTTTAAATTGTTTATCAAATCTTCCAATTGGATACTGCAAGTTATTTAAAAGAGCCCGTTTGAAGCGGGGCGGTGGCTCAGGTCTGTGTGCCAGTAATGTTGGTAGTACATGCTTGTGTCCTGCATGGTTGAAGATAGTAATGAAGGCATTTGCTTTCATAAACATTTTTTCTGCATTTCTTCATTTACAGTGTAGGAAAATAACCGTATGTATTCTGGAAGAAGCGCTGAATCAGCTTGGAAAGTTTGGAGTCAAACTTGAACTCCAGGACATGAAAAAACTTTCCATTCTTTGTCCACAGCTAGTATGTTTTGGAAATGACATAGAGCATACAGGATTTGGTGATTTCATTGTTGTCATAAACCATTCAACAAGCAATAACGATCAGATTGAAAATAATCCTAAAAGAGCTCGCAAGTGGTTGTATATTTCGAAGATTGTCAGTACATTGAAGAAAAGGGATAGGTCTTTTCGAAATAATCTGTGGATGGCTTTTGAGCAGCTGCCGATTGTCTTAGATGAGGTGGCTGTGGGAATTTCCTTAGAAGAATTGGTTGCAGCAATGAAGGACCATGATTTTGTTGGAAAGGCAAACAAAGCAAAACGTGTAAAGAGAAGCTCAACTACCTCAAAACCTGCTCTGGACCACCTTGGGTGTCATATAATTGGTTTGATGTTTAACGAGATGGTAAGGTTGTTGCTTACTGACCATGAGGTCACGGGTTCAAATCCTGGAAACAACATCTCCGCTTACAAGGGTAAGGCTTCCTACATCTACCCTCTCCAGACCCTAGACACAAAGCCATTGCTGGTTATGGACATGGTTGATCATCTTAAGAATGGAATTGGCTCTAGCGGACAGATTGTGCATGTTGAAGATATATGTGCAAGAACAGCGATTCACACAGAGATGTCAATTGAACTATCAGAACAAACGAGAACTGCACTGGAGTGTATTGGAGTTTCCAAATTGTATAGTCACCAGGCAGAGTCTATACAAGCCTCACTTAATGAGAAGAATGTTGTTGTGGCTACAATGACATCTAGTGGCAAATCTCTGTGCTATAACATACCAGTCCTAGAAGTGTTGTGCAAGAGTTCATCATCATGTGCTTTGTACATATTTCCCACAAAGGCATTAGCTCAAGATCAACTAAGAGCTATGTTATACATGACAAAAGGATTTGACGTTGACTTCAATATTGGTATATATGATGGTGACACTTCTCAAAGTGAGAGGACACGGCTACGTGAAAATTCTAGATTGTTGATCACGAATCCAGATATGTTACACATATCAATCTTGCCTCACCATCAGCGATTTAGTCGGATTTTATCAAATCTAAGGTTTGTAGTAATTGATGAAAGTCATACTTACAAGGGAGCATTTGGATGTCATACTGCCCTTATATTAAGGAGGCTCAGGCGACTCTGCTTACATGTATATGGATCTGTTCCTTCTTTTGTTTTTTCTACTGCAACTTCTGCAAATCCTCGTGAGCATTCTATGGAACTTGCAAATTTACCAACAATGGAGCTATTTCAGAACGATGGAAGTCCATCTTCAGGGAAACGTTTCATCCTTTGGAATCCTGTTCCACTTCTAAAAGCTATCTTGAATAAAGCTCAGTTTGCTATGGGTACTGATGAGCTAGCTGATGAAAGTTCTAATTTTGTTCGTTCAAGCCCAATCGTGGATGTTTCACGACTTTTTGCAGAAATGGTCAAGCATGGTCTTCGCTGCATTGCATTTTGTAAATCGCGGAAACTTTGTGAGCTTGTTTTATCCTATACACGCGAGATTCTTCATGAGACAGCCCCACATCTGATGGATTCCATATGTGCATATCGTGGTGGCTACATTGCAGAGGAAAGAAGGAAAATTGAGAGTGCATTTTTCGGTGGCAAAATTTGTGGTGTTGCTGCAACTAATGCTCTTGAGTTGGGCATTGATGTTGGGGAGATTGACGTGACTCTGCATCTAGGATTTCCGGGAAGTATTGCAAGCTTGTGGCAACAAGCTGGTAGGGGTGGGAGAAGAGATAGACCATCTCTTGCTGTATATGTTGCATTTGGTGGGCCTCTTGATCAATACTTTATGAACCACCCTAAGAAACTATTTGAAAGACCAATAGAATGCTGTCATATTGATTCCCAAAACAAGCAGGTTCTTGAACAGCATTTGGTCTGTGCAGCTTATGAACACCCTCTCTGTGTGCAGTATGATAAGCAGTATTTTGGTTCTTGCTTAGAGAGTGTTTTGATTTCTCTAAAAGCTAGAGGATTCTTGAATTCTGATCTGTCATCTGATTCTTCTTCTAGAATATGGAACTACATTGGTCCTGAGAAATTACCATCGCATGCAGTCAAGATCCGAACTATTGAAGCTGTAAGATATAGTGTCATCGATCAGGAAAAAAATGAAGTCCTTGAAGAGATAGAGGAAAGCAAGGCTTTCTTCCAGGTATATGAAGGTGCTGTGTACATGTGCCAGGGGAAAACCTATTTGGTTGAAAAATTAGATCTATCTAGCAAAATTGCTTTCTGCAAAAAGGCTGACGTGAAGTATTATACGAAGACTCGAGATTACACTGATATTCATGTCATTGGGGGTAATATTGCTTATCCAGCAATGGTGTCCACCATGTCTCCAAAAATAAATGCCCGAGCTCATTCATGCAAAGTAACAACTACTTGGTTTGGTTTTTATCGTTTTCGGAGAGGAAGCAATCAAATTCTTGATGCTGTTGACCTGACACTTCCTCAATATTCATACGAGTCACAGGCGGCATGGGTTTCGGTGCCACAGTCGATGAAAGAAGCAGTAATCAAGCAGAATTATGATTTCCGTGGAGGCTTGCATGCTGCTTCACACGCTGTTTTAAATGTAGTTCCCTTACATATAACATGCAACTTGTCTGACTTGGCTTCTGAGTGTCCCGATCCTCGTGATAATAGATACTACCCTGAAAGAATTCTAATATATGATCAACATCCTGGAGGGTGTGGAATTTCAGTACAGGCTCAATCCTGTTTCACAAAGATCTTGACAGCTGCACTAGAGCTTCTTACATGTTGCTGCTGCTCAGCTGATGTAGGTTGTCCTCATTGTGTTCAGCGTGATGCGACCCAAATATGGTCTGATGCAGTTGCAATACGGTCTGATGCGGCCGTATCATTGTGA 3906 0.4101 MAEKEIQVRTLTGDSIILHISPTATVHDLKLLLIHSFPPATNSPNFHLFSKAHSLPPSIITLSLYFNFYIISTFLATRFYHKYVNFTKGHKLRLQAQIGSYSIELGEFLVLVPFTKKESTQANKPDPLQASVTSSNATSNLAESTWCNIMEDLSNLRGTTDTGPSNANDEASNFEYSGPRKEKMVVEDTCSDFFDPKTKQGFGPDKQMELPYHLILNTLQYTSEGVLGEHNCEVFSKVLEPLNCLSNLPIGYCKLFKRARLKRGGGSGLCASNVGSTCLCPAWLKIVMKAFAFINIFSAFLHLQCRKITVCILEEALNQLGKFGVKLELQDMKKLSILCPQLVCFGNDIEHTGFGDFIVVINHSTSNNDQIENNPKRARKWLYISKIVSTLKKRDRSFRNNLWMAFEQLPIVLDEVAVGISLEELVAAMKDHDFVGKANKAKRVKRSSTTSKPALDHLGCHIIGLMFNEMVRLLLTDHEVTGSNPGNNISAYKGKASYIYPLQTLDTKPLLVMDMVDHLKNGIGSSGQIVHVEDICARTAIHTEMSIELSEQTRTALECIGVSKLYSHQAESIQASLNEKNVVVATMTSSGKSLCYNIPVLEVLCKSSSSCALYIFPTKALAQDQLRAMLYMTKGFDVDFNIGIYDGDTSQSERTRLRENSRLLITNPDMLHISILPHHQRFSRILSNLRFVVIDESHTYKGAFGCHTALILRRLRRLCLHVYGSVPSFVFSTATSANPREHSMELANLPTMELFQNDGSPSSGKRFILWNPVPLLKAILNKAQFAMGTDELADESSNFVRSSPIVDVSRLFAEMVKHGLRCIAFCKSRKLCELVLSYTREILHETAPHLMDSICAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAVYVAFGGPLDQYFMNHPKKLFERPIECCHIDSQNKQVLEQHLVCAAYEHPLCVQYDKQYFGSCLESVLISLKARGFLNSDLSSDSSSRIWNYIGPEKLPSHAVKIRTIEAVRYSVIDQEKNEVLEEIEESKAFFQVYEGAVYMCQGKTYLVEKLDLSSKIAFCKKADVKYYTKTRDYTDIHVIGGNIAYPAMVSTMSPKINARAHSCKVTTTWFGFYRFRRGSNQILDAVDLTLPQYSYESQAAWVSVPQSMKEAVIKQNYDFRGGLHAASHAVLNVVPLHITCNLSDLASECPDPRDNRYYPERILIYDQHPGGCGISVQAQSCFTKILTAALELLTCCCCSADVGCPHCVQRDATQIWSDAVAIRSDAAVSL 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1228 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 929 IPR027417 -
Lal4g1228 1301 SMART ultradead3 561 770 IPR014001 -
Lal4g1228 1301 PANTHER ATP-DEPENDENT HELICASE HRQ1 74 1283 - -
Lal4g1228 1301 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 807 965 IPR001650 -
Lal4g1228 1301 Pfam MrfA Zn-binding domain 1197 1279 IPR018973 -
Lal4g1228 1301 Gene3D - 537 756 IPR027417 -
Lal4g1228 1301 CDD SF2_C_Hrq 766 931 - -
Lal4g1228 1301 CDD DEXHc_Hrq1-like 565 746 - -
Lal4g1228 1301 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 573 754 IPR014001 -
Lal4g1228 1301 SMART helicmild6 844 922 IPR001650 -
Lal4g1228 1301 Pfam DEAD/DEAH box helicase 567 736 IPR011545 GO:0003676|GO:0005524
Lal4g1228 1301 Gene3D - 803 929 IPR027417 -
Lal4g1228 1301 Pfam Helicase conserved C-terminal domain 814 920 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1228 Lal-Chr4 16182117 16198438 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1228 - - gmx:100819522 1756.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1228 4 16182117 16198438 Lal4g1228 4 16182117 16198438 ECH