Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0748 ATGGCGAATTCGAACTGGAAGGTTAGTCTTCAACCCACAAAGGTTGTCGTTTTGGCTGATCTCAACGTTGATCCTCCTGAAAACGACGATGATGATGATTCCCCCTTTCTCCTTCCACCTCTTCCACCATCAATTTCCAGGTCGACAATTGATGAAAACACTCAAGATAAGAGTTTGTTGTCCAAAGACACTGATATTATTGAAGGTGAAGGTAAGAAATTGAACAAACTGGGGAAATGCCGCTCCAGGCTAAGCAAGACAGATACTTCTCTTGATTTTGTAGCTGATGCAGAGGGTGATCAACATGTTCATGGGGCTCCTTCCACTCGGGAGGAAAAAGTTAGCAGCATCAAGACTGGCTTGGTTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCGCATTTTATACTTGGCTTGATGTACCAAAGATTGAGCCAACCTCAAAAGGCGGTATTGGCTTATGAGAAGGCAGAAGAGATCTTACTCAGACCTGAAGCTGAGATTGATAGGCCAGAGATGCTTTCTCTAGTTCAGATTCACCATGCACAGTGCCTGATTCTAGAAAGTTCATCAGAAGATAGTTCAGATAAAGAACTTGAACCTCACGAACTTGAGGAAATTCTTTCCAAATTGAAAGAGTCTGTACGGTCAGATATCAGACAGGCTGCTGTGTGGAATACATTAGGCTTTATCCTTCTTAAAACCGGTCGAGTGCAGAGTGCTATTTCAGTTTTGTCATCATTGTTGGCCATTACACCAGAGAACTATGATTGCCTAGGAAATCTTGGGATAGCTTATCTCCAAATTGGGAATTTGGAATTATCTGCAAAATGTTTCCAAGAGCTGATCCTAAAAGATCAAAATCATCCTGCAGCTTTGGTCAACTATGCTTCCCTTATTTTATGTAAATATGCTTCTGTTGTAGCAGGGGCGGGTGCAAGTGCTGCTGAAGGTGCTTCGGCAGATCAGGTTACGGCTGCTAATGTTGCTAAGGAATGTTTGTTAGCTGCAGTCAAAGCAGATGGCAAATCAGCTCATATCTGGGCAAATCTTGCCTATGCATTTTTTATTACTGGTGATCATCGAAGTTCCAGCAAATGCTTGGAGAAGGCAGCAAAACTCGATCCCAATTGCATGTCTACTCGTTATGCTGTTGCTACCCATCGAATAAAGGAGGCCGAAAGATCACAAGATCCAAGTGAACTGCTTTCATGTGCTGGAAATGAGATGGCTTCTATAGTAAGAGATGGTGATTCATCCCTGGTTGAGCTTCCAGTAGCATGGGCTGGGCTTGCCATGGTCCACAAGGCTCAGCATGAGATTGCAGCAGCATATGAAGGTGAAAAGAATGGGCTGGTGGAAATTGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGCTATAGCCGAAGATCCAGATGATGCTGTCCAGTGGCACCAACTTGGCCTTCATAGTCTTTGTGCCCGGCAATTCAAAACTTCCCAAAAGTACCTCAAAGCTGCTGTTGCCTACGACAAGAATTGCAGCTATGCATGGTCTAACCTAGGTGTCTCACTTCAACTATCAGAAGAACCATCTCAAGCCGAAAAAGTATACAAACATGCTTTGTCTTTGGCGACAACTCAACAAGCGCATGCAATATTGTCCAACTTGGGAATTTTCTATCGCCACCAGAAACAATATGAACGTGCGAAGGCAATGTTTACTAAGTCGCTTGAATTACAGCCTGGCTATGCTCCCGCGTTTAACAATCTGGGTCTTGTGTTTGTTGCTGAGGGTCTTTGGGATGAGGCCAAGTACTGTTTTGACAAAGCACTTCAATCAGATCCATTGCTGGATGCAGCAAAGTCTAACTTGAGTAAGGTGGTTGCCATGTCAAAGTTATGCAGGGGCCTCTCCTCAACCCTTCTTAAAGAATGA 1920 0.4396 MANSNWKVSLQPTKVVVLADLNVDPPENDDDDDSPFLLPPLPPSISRSTIDENTQDKSLLSKDTDIIEGEGKKLNKLGKCRSRLSKTDTSLDFVADAEGDQHVHGAPSTREEKVSSIKTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRPEAEIDRPEMLSLVQIHHAQCLILESSSEDSSDKELEPHELEEILSKLKESVRSDIRQAAVWNTLGFILLKTGRVQSAISVLSSLLAITPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQNHPAALVNYASLILCKYASVVAGAGASAAEGASADQVTAANVAKECLLAAVKADGKSAHIWANLAYAFFITGDHRSSSKCLEKAAKLDPNCMSTRYAVATHRIKEAERSQDPSELLSCAGNEMASIVRDGDSSLVELPVAWAGLAMVHKAQHEIAAAYEGEKNGLVEIEERAVCSLKQAIAEDPDDAVQWHQLGLHSLCARQFKTSQKYLKAAVAYDKNCSYAWSNLGVSLQLSEEPSQAEKVYKHALSLATTQQAHAILSNLGIFYRHQKQYERAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLWDEAKYCFDKALQSDPLLDAAKSNLSKVVAMSKLCRGLSSTLLKE 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0748 639 MobiDBLite consensus disorder prediction 21 55 - -
Lal4g0748 639 Pfam Tetratricopeptide repeat 233 292 - -
Lal4g0748 639 Pfam Tetratricopeptide repeat 346 379 IPR019734 GO:0005515
Lal4g0748 639 SMART tpr_5 475 508 IPR019734 GO:0005515
Lal4g0748 639 SMART tpr_5 579 612 IPR019734 GO:0005515
Lal4g0748 639 SMART tpr_5 509 542 IPR019734 GO:0005515
Lal4g0748 639 SMART tpr_5 545 578 IPR019734 GO:0005515
Lal4g0748 639 SMART tpr_5 257 290 IPR019734 GO:0005515
Lal4g0748 639 SMART tpr_5 346 379 IPR019734 GO:0005515
Lal4g0748 639 SMART tpr_5 223 256 IPR019734 GO:0005515
Lal4g0748 639 SMART tpr_5 132 165 IPR019734 GO:0005515
Lal4g0748 639 Pfam Tetratricopeptide repeat 545 607 - -
Lal4g0748 639 ProSiteProfiles TPR repeat profile. 579 612 IPR019734 GO:0005515
Lal4g0748 639 SUPERFAMILY TPR-like 322 538 IPR011990 GO:0005515
Lal4g0748 639 Gene3D Tetratricopeptide repeat domain 545 623 IPR011990 GO:0005515
Lal4g0748 639 Gene3D Tetratricopeptide repeat domain 319 414 IPR011990 GO:0005515
Lal4g0748 639 Gene3D Tetratricopeptide repeat domain 458 544 IPR011990 GO:0005515
Lal4g0748 639 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 7 635 - -
Lal4g0748 639 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 7 635 - -
Lal4g0748 639 ProSiteProfiles TPR repeat profile. 545 578 IPR019734 GO:0005515
Lal4g0748 639 SUPERFAMILY TPR-like 223 610 IPR011990 GO:0005515
Lal4g0748 639 ProSiteProfiles TPR repeat profile. 346 379 IPR019734 GO:0005515
Lal4g0748 639 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Lal4g0748 639 Gene3D Tetratricopeptide repeat domain 74 310 IPR011990 GO:0005515
Lal4g0748 639 Coils Coil 637 639 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0748 496 638 Glycosyltransferase AT3G04240 28.671 2.49e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0748 - - gmx:100786537 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0748 4 6247651 6258671 Lal4g0748 4 6247651 6258671 ECH