Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0730 ATGTCTAGAAAGATGAGGAATGAGACACAATTTGAGAGTGTAGTTAGATATTTTGATGAAGATGGTGATGGAAAGGTTTCACCTTCTGAGCTTAGGCACAGGCTAAGTATGATGGGTGGAGAGTTTTTGCAGAAAGAAGCAGAAATGGTAATTGAAGCATTGGATTCAGATGGTGATGGGTTTCTAAGTTTGGAAGATTTGATTGTGTTGATGGAAGAAGGTGGAGAAGAAGAAAAGTTGAAGGATTTGAGGGATGCTTTTGAGATGTATGATACTGAAAAGTGTGGTTTTATAACACCCAAAAGTTTGAAGAAGATGCTTAGAAGAATGGGGGAATCTAAGTCCATTGATGAATGCAAAATGATGATCAATCACTTTGATTTGAATGGGGATGGAGTGCTTAGCTTTGAAGAATTCAGAATTATGATGCAGTGA 435 0.3747 MSRKMRNETQFESVVRYFDEDGDGKVSPSELRHRLSMMGGEFLQKEAEMVIEALDSDGDGFLSLEDLIVLMEEGGEEEKLKDLRDAFEMYDTEKCGFITPKSLKKMLRRMGESKSIDECKMMINHFDLNGDGVLSFEEFRIMMQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0730 144 SMART efh_1 82 110 IPR002048 GO:0005509
Lal4g0730 144 SMART efh_1 10 38 IPR002048 GO:0005509
Lal4g0730 144 SMART efh_1 118 144 IPR002048 GO:0005509
Lal4g0730 144 SMART efh_1 46 74 IPR002048 GO:0005509
Lal4g0730 144 CDD EFh 10 71 IPR002048 GO:0005509
Lal4g0730 144 Gene3D - 3 74 - -
Lal4g0730 144 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Lal4g0730 144 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Lal4g0730 144 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Lal4g0730 144 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Lal4g0730 144 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Lal4g0730 144 SUPERFAMILY EF-hand 10 144 IPR011992 -
Lal4g0730 144 CDD EFh 82 144 IPR002048 GO:0005509
Lal4g0730 144 Pfam EF-hand domain pair 81 144 IPR002048 GO:0005509
Lal4g0730 144 Pfam EF-hand domain pair 16 71 IPR002048 GO:0005509
Lal4g0730 144 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 144 - -
Lal4g0730 144 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Lal4g0730 144 Gene3D - 75 144 - -
Lal4g0730 144 ProSiteProfiles EF-hand calcium-binding domain profile. 114 144 IPR002048 GO:0005509
Lal4g0730 144 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 7 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0730 Lal-Chr4 6075367 6075801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0730 7 144 EF-hand Containing Proteins AT5G42380 45.714 1.04e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0730 K13448 - gmx:100778709 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0730 4 6075367 6075801 Lal4g0730 4 6075367 6075801 ECH