Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0673 ATGTGTCTGGGCAGTGACAATAACAGCAACAACCCTGTTAAGAAAATGGTGCCAGTGTCAATGGATGATGTCCTTCTAGCTTTAGGTGAAACCAATGAAGAGAGGGAACTTCGTATCCGGGGCCAATTCAATTTTTTCGATGTCGCCAAAAATGGGTACTTGGACTATGCTCAGATTGAAGCAGGCTTGTCTGCACTGCAAATCCCCCCTGAGTACAAGTATGCCAAGGATCTCTTCAAGGTCTGTGATGCCAACAGCGATGGCCGGATCGATTACCTTGAGTTTCGCCGATACATGGATGATAAAGAATTGGAGCTTTACCAAATCTTTCAATCCATTGATGTTGAACAGAATGGCAGCATTCAATCTGAAGAGCTTTCAGATGCACTTGGCAGGACCGTATTTATTAAACGCCTATGCAACTTCATTGCTTCAGGGATTGAAATGAAAAAGGGGGAGCTTGCTCGTTTTTTGGAGCATGTTGATAAGGATAACAATGGAGTTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTTTACCCTCATGAAGCAACTATTGAAAATATATATGAACATTGGGAGAGGGTGTGCCTTGTAGACATTGGAGAGCATGTTGCCATTCTTGAAGGTATAAGCAAGCATGGAAACGCGATCAAATATTTCATTGCCGGGGGAATAGCAGGAGCTATTTCTCGTACCGCAACCGCTCCTCTTGATCGTCTGAAGGTGGTCTTACAAGTTCAAACTACACATGCTTCTGTTATGCCAGCTATAATGAAGATAAGGCAGCAAGATGGTTTATTAGGATTTTTCCGGGGCAATGGATTGAATATTGTGAAAATAGCACCAGAAAGTGCCATAAAGTTTTATGCTTATGAAATGCTGAAAAAAGTACTTGGAGATGCTCAAGGCAATAAATCTGACATTGGTCTTACTGGAAGGCTTTTTGCAGGTGGTATGGCCGGTGCAATTGCACAGGCTTCTATCTACCCACTCGAAGTTATTAAAACTAGGTTACAGACCTGTGCCAATGAGGGTGGAACCGGTCCGAAGCTCGTAACACTGACAAAGAGGATGTTATTTCAAGAGGGACCTCGATCTTTCTACAGAGGGCTTGTTCCATCTCTCCTCGGTATAATTCCTTATGCAGGCATTGATCTGGCAGCTTACGAGACCTTGAAAGATATGTCCAAGAGACATATTCTTAAGGATAATGAACCCGGTGCTCTAGTACAACTAGGATGTGGGACAGTTTCTGGTGCTCTTGGAGCTACTTGTGTCTACCCCTTGCAGGTGATTCGTACAAGACTGATGGCACAACCTACCAACACTTCTGATGCTTACAAGGGGATGTCTGATGCATTTTGGAGAACTTTTCAGCACGAAGGCTTTAAAGGTTTCTACAAGGGTCTCTTTCCAAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTACATGGTCTATGAAAGTATGAAGAAGAATCTAGATTTGGATTAG 1503 0.4291 MCLGSDNNSNNPVKKMVPVSMDDVLLALGETNEERELRIRGQFNFFDVAKNGYLDYAQIEAGLSALQIPPEYKYAKDLFKVCDANSDGRIDYLEFRRYMDDKELELYQIFQSIDVEQNGSIQSEELSDALGRTVFIKRLCNFIASGIEMKKGELARFLEHVDKDNNGVITFEEWRDFLLLYPHEATIENIYEHWERVCLVDIGEHVAILEGISKHGNAIKYFIAGGIAGAISRTATAPLDRLKVVLQVQTTHASVMPAIMKIRQQDGLLGFFRGNGLNIVKIAPESAIKFYAYEMLKKVLGDAQGNKSDIGLTGRLFAGGMAGAIAQASIYPLEVIKTRLQTCANEGGTGPKLVTLTKRMLFQEGPRSFYRGLVPSLLGIIPYAGIDLAAYETLKDMSKRHILKDNEPGALVQLGCGTVSGALGATCVYPLQVIRTRLMAQPTNTSDAYKGMSDAFWRTFQHEGFKGFYKGLFPNLLKVVPAASITYMVYESMKKNLDLD 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0673 500 SUPERFAMILY EF-hand 27 203 IPR011992 -
Lal4g0673 500 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Lal4g0673 500 SMART efh_1 153 181 IPR002048 GO:0005509
Lal4g0673 500 SMART efh_1 105 133 IPR002048 GO:0005509
Lal4g0673 500 SMART efh_1 74 102 IPR002048 GO:0005509
Lal4g0673 500 SMART efh_1 38 66 IPR002048 GO:0005509
Lal4g0673 500 PRINTS Mitochondrial carrier protein signature 221 234 IPR002067 GO:0055085
Lal4g0673 500 PRINTS Mitochondrial carrier protein signature 234 248 IPR002067 GO:0055085
Lal4g0673 500 PRINTS Mitochondrial carrier protein signature 274 294 IPR002067 GO:0055085
Lal4g0673 500 PRINTS Mitochondrial carrier protein signature 325 343 IPR002067 GO:0055085
Lal4g0673 500 PRINTS Mitochondrial carrier protein signature 370 388 IPR002067 GO:0055085
Lal4g0673 500 PRINTS Mitochondrial carrier protein signature 417 439 IPR002067 GO:0055085
Lal4g0673 500 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Lal4g0673 500 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 50 498 - -
Lal4g0673 500 CDD EFh 105 178 IPR002048 GO:0005509
Lal4g0673 500 PANTHER SOLUTE CARRIER FAMILY 25 50 498 - -
Lal4g0673 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 408 496 IPR018108 -
Lal4g0673 500 SUPERFAMILY Mitochondrial carrier 215 491 IPR023395 -
Lal4g0673 500 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Lal4g0673 500 Pfam Mitochondrial carrier protein 409 497 IPR018108 -
Lal4g0673 500 Pfam Mitochondrial carrier protein 309 398 IPR018108 -
Lal4g0673 500 Pfam Mitochondrial carrier protein 217 302 IPR018108 -
Lal4g0673 500 Gene3D Mitochondrial carrier domain 212 498 IPR023395 -
Lal4g0673 500 Gene3D - 3 105 - -
Lal4g0673 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 310 397 IPR018108 -
Lal4g0673 500 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 299 IPR018108 -
Lal4g0673 500 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Lal4g0673 500 Pfam EF-hand domain pair 105 176 IPR002048 GO:0005509
Lal4g0673 500 Pfam EF hand 76 97 IPR002048 GO:0005509
Lal4g0673 500 Gene3D - 117 204 - -
Lal4g0673 500 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0673 Lal-Chr4 5206601 5209917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0673 5 500 EF-hand Containing Proteins AT5G51050 69.076 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0673 K14684 - gmx:100791305 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0673 4 5206601 5209917 Lal4g0673 4 5206601 5209917 ECH