Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0638 ATGGGTACCCGCACCGTCACGGTTCTGAACGTGGCGGAGAAGCCCTCCGTGGCGAAGTCCGTCTCCGCCATCCTCTCACGCAACCAAGGTCTCCGAGTTCGTGAAGGCCGTTCTCGCTACAACAAGATTTTCGAGTTCTCTTACTCCATCCGAGGCCAGCCTTGTCAAATGCTCTTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAGTTCGAAGACCGATACCGTAAGTGGCACTCTTGTGACCCCGCTGATCTCTATCATGCTCCCGTTCGTAAATTCGTTCCTGAGGACAAGAAGGATATCAAAAGGACACTAGAGGAGGAAGCTAGAAGGTGCCAGTGGCTTGTGTTATGGCTTGATTGTGATAGAGAGGGTGAAAACATTGCATTTGAAGTGGTGGACGTGTGCACTGCAGCAAATCGTTATGTTACTTTAAAGAGGGCTCGTTTTTCTGCATTGATTGACAGGGAAATCCATAATGCTGTGCAGAATCTTGTTGAACCTAATAAGTGGTTTGCTGATGCTGTGGATGCTAGGCAAGAAATAGATCTTCGTATTGGTGCTTCTTTCACCAGGTTCCAGACCATGTTACTTAGAGATGCTTTTATCATCGACACCCCTACAGATGACAGAAATCTCGTCTTAAGTTACGGTCCTTGCCAGTTCCCTACACTTGGATTTGTTGTGGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGTTGATAAATTGTTCTCATAGATCAGATGAAGGCGTTGCTAATTTTAGCTGGATGCGAGGGCATCTATTTGACTATACTTGTGCCACTATAATATATGAGATGTGCATCGAGGAACCAAATGCAACTGTCACAAATGTTAGACAACAGGAGAAGCTGAAGTATCCTCCATATCCTCTGAATACCATTGAGCTTGAGAAACGTGCTTCACGATACTTCCGGATGAGTTCTGAGCACACAATGAAGGTGGCAGAAGAACTTTACCAAGCTGGTTTCATCAGTTATCCCCGTACAGAAACTGATAGCTTTTCTTCAAGAACTGATTTGCATGTGGGTAACTTTTGTCTTCTGTTCAAGCATGAAACAATTGTCCAAGAACAACAAGGGCATCCTGAATGGGGAATATATGCACAGCGGTTGTTGGACCCTGGGACAGGACTTTGGAGAAACCCTAGGGGTGGTGGACATGATGACAAGGCCCATCCACCCATCCACCCGACAAAGTTTTCTGCTGGAGAAGCTGGATGGAGCCAAGATCACCGTAAGTTGTATGAGCTGGTTGTTCGCCACTTCCTGGCATGTGTCTCAAAGCCTGCTGTAGGAGCTGAAACCACAGTTGAAATTGATATTGCTGGTGAACAGTTTTCTGTCTGTGGAAGGGTGATTCTAGAGAAAAATTACTTGGATGTTTATCCCTTTGAGTCTTGGGGTGGATCAATGATTCCAACATATACTGTTGGTCAACAGATTGACCATGGAGGCTATATACTTGCTACGACGATTGATAGAGAGATACCGAATAGACCAAAGGGACTAAACATGATTTTCATTAGTTTGGAGAAGACATATAATAAGGTGCTGAGAGAGGTATTGTGGAAAACTCAAGAGAAGAAAGGAGTCCGGGTTGGCTACATTCCAGTAATGAAGGATACGTATGATGAGTTTAAGATTGGTGTTAGAACACAACATGAGTTCATTCCAACTACATTGACCCTTGATTCAGGAGTAACCAGGCCCCCGCCGCTTCTGAGTGAAGCTGATCTTCTGAGTTCTATGGACAAGGAGGGTATTGGTACAGATGCTACAATGCATGACCACATCAAGAAGCTGCTTGATCGATTTTATGTAACTAAGGATTCTAGCACTCGTTTCACACCAACTAATCTTCACTACAGTGCTAAATATGCCAAATCAAGCTCTAGATGTCCAGCTGATGAGTCAGTGGCGAACAAGGGTGAGGCACTTGTTATGGGATACGATGATATGGGGTATAAACTTTGGAAACCAGATCTTAGAGCAGTCATGGAACGTGACATGAAATCAGTCAGTGAAGGGGTTAAAAGCAAAGATGAAGTTTTGGCAACTAGTTTGCAGCAGATGAAAGCTTGTTTCCTTGACGCAAGATTGAATAAAGTAAAACTTTTAGAAGCCATGGGAATATTTTTTGAAAGATCTAATAGAGCTGGTGGTGATGAGTTGCACGCAACTGGGGAAGTTGTTCGGAAATGTGGACTTTGCCAAGAATCAGACATGGTGCTAAAGAAAAATCGAGATGGCAATTTTATGGTTGGATGTTTGGGTTTCCCTCAGTGCAGGAATGCTGTCTGGCTCCCTGGTTCAGTATCAGAAGCGGCTGTGACAACCAATACTTGCAACATTTGTACTCCTGGTCCTGTTTACTTGATTCAATTCAAGTTTCGGCAGCTGGAAATACCACCAAACTACAGTGTCAATCATTTAGGTTGCATTGGTGGCTGTGACGAGGTTCTTACACAATTGACAGAAATATGTGGTAGGGGTCCTCGCATGCCAGCAAGAGCTAGAGGACCAATTACACCAGCCAGCCATGCCAACCAAAGTAACACAAGGCAAGGACTTTGTACGAACTGTCAACAAACAGGGCATTCTTCTAATGATTGTCCTTCACAGAATTTAAGGTCTAGGAATGCCGAACATCGTAGAGTGAACCAACATAATGGATTTTTGACTGTCCGCCATGAACCACCATCCACCATTGATAACATTGTTCCCTCAATCCCCTCATACCAGCTGTCCAGTTTGTTATGTTCTCTTCCCCTTCCAGCCGATCCCCGTACTCCCTCCATATACCATGCTCAACCTGCTGAAAAACCACAACCTAGCCAGTCCCTGACATGGCCGCTTGTCAGAACCCCACCGCCAGCCCTCTTCCTAAAAAATGCCAATCATGAGCCCACACATCACGGGTATCTTGGTCATGATAACATACACGCAGGGGAAGATTCTGTTTCATGCAGTTCATGTGGAGCACCATGTGTTTTGCGAACTGCAAATACAGCTAATAACAGGGGAAGGAAGTTCTACTCGTGTCAATCACAAGAGTGCAACTTTTTTGTATGGAAGGATAGCCTTAACAATAGCACTGGAGAAAGAAGTTTTACACGTTCAAATACTATTCCAGCATCCAACCCTGGCAGAAATGGTGGTCGTGGTCGTGGGCAGCGTGGTAGAGGTAGCCGGAATGGACCTCCTGCTGCTACCACAACTTTTGTGTCAGCCACTGGCGATCCTATATCTGGTAGAAGGTGCTTTGTGTGTGGTGATCCATCTCACTTTGCTAATGTCTGCCCCAACCGCGGAGGCTGA 3357 0.4534 MGTRTVTVLNVAEKPSVAKSVSAILSRNQGLRVREGRSRYNKIFEFSYSIRGQPCQMLFTSVTGHLMELEFEDRYRKWHSCDPADLYHAPVRKFVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTAANRYVTLKRARFSALIDREIHNAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLLRDAFIIDTPTDDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWLINCSHRSDEGVANFSWMRGHLFDYTCATIIYEMCIEEPNATVTNVRQQEKLKYPPYPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHVGNFCLLFKHETIVQEQQGHPEWGIYAQRLLDPGTGLWRNPRGGGHDDKAHPPIHPTKFSAGEAGWSQDHRKLYELVVRHFLACVSKPAVGAETTVEIDIAGEQFSVCGRVILEKNYLDVYPFESWGGSMIPTYTVGQQIDHGGYILATTIDREIPNRPKGLNMIFISLEKTYNKVLREVLWKTQEKKGVRVGYIPVMKDTYDEFKIGVRTQHEFIPTTLTLDSGVTRPPPLLSEADLLSSMDKEGIGTDATMHDHIKKLLDRFYVTKDSSTRFTPTNLHYSAKYAKSSSRCPADESVANKGEALVMGYDDMGYKLWKPDLRAVMERDMKSVSEGVKSKDEVLATSLQQMKACFLDARLNKVKLLEAMGIFFERSNRAGGDELHATGEVVRKCGLCQESDMVLKKNRDGNFMVGCLGFPQCRNAVWLPGSVSEAAVTTNTCNICTPGPVYLIQFKFRQLEIPPNYSVNHLGCIGGCDEVLTQLTEICGRGPRMPARARGPITPASHANQSNTRQGLCTNCQQTGHSSNDCPSQNLRSRNAEHRRVNQHNGFLTVRHEPPSTIDNIVPSIPSYQLSSLLCSLPLPADPRTPSIYHAQPAEKPQPSQSLTWPLVRTPPPALFLKNANHEPTHHGYLGHDNIHAGEDSVSCSSCGAPCVLRTANTANNRGRKFYSCQSQECNFFVWKDSLNNSTGERSFTRSNTIPASNPGRNGGRGRGQRGRGSRNGPPAATTTFVSATGDPISGRRCFVCGDPSHFANVCPNRGG 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0638 1118 Gene3D - 2 169 - -
Lal4g0638 1118 ProSiteProfiles Toprim domain profile. 7 152 IPR006171 -
Lal4g0638 1118 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 495 - -
Lal4g0638 1118 PANTHER DNA TOPOISOMERASE 3-ALPHA 564 808 - -
Lal4g0638 1118 Gene3D Topoisomerase I, domain 4 300 441 IPR013826 -
Lal4g0638 1118 ProSiteProfiles Zinc finger CCHC-type profile. 1098 1115 IPR001878 GO:0003676|GO:0008270
Lal4g0638 1118 Pfam DNA topoisomerase 529 633 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal4g0638 1118 Pfam DNA topoisomerase 170 497 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal4g0638 1118 Gene3D Bacterial Topoisomerase I, domain 1 736 782 - -
Lal4g0638 1118 MobiDBLite consensus disorder prediction 1045 1061 - -
Lal4g0638 1118 PANTHER PROKARYOTIC DNA TOPOISOMERASE 564 808 IPR000380 GO:0003677|GO:0003917|GO:0006265
Lal4g0638 1118 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 495 IPR000380 GO:0003677|GO:0003917|GO:0006265
Lal4g0638 1118 SMART c2hcfinal6 870 886 IPR001878 GO:0003676|GO:0008270
Lal4g0638 1118 SMART c2hcfinal6 1099 1115 IPR001878 GO:0003676|GO:0008270
Lal4g0638 1118 Pfam Zinc knuckle 870 886 IPR001878 GO:0003676|GO:0008270
Lal4g0638 1118 MobiDBLite consensus disorder prediction 857 872 - -
Lal4g0638 1118 SUPERFAMILY Prokaryotic type I DNA topoisomerase 6 705 IPR023405 -
Lal4g0638 1118 SUPERFAMILY Retrovirus zinc finger-like domains 860 887 IPR036875 GO:0003676|GO:0008270
Lal4g0638 1118 MobiDBLite consensus disorder prediction 1045 1090 - -
Lal4g0638 1118 Gene3D Topoisomerase I, domain 2 171 283 IPR013824 -
Lal4g0638 1118 Gene3D Topoisomerase I, domain 2 570 726 IPR013824 -
Lal4g0638 1118 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Lal4g0638 1118 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal4g0638 1118 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal4g0638 1118 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal4g0638 1118 PRINTS Prokaryotic DNA topoisomerase I signature 427 443 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal4g0638 1118 PRINTS Prokaryotic DNA topoisomerase I signature 600 614 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal4g0638 1118 Pfam GRF zinc finger 1001 1040 IPR010666 GO:0008270
Lal4g0638 1118 Pfam Topoisomerase DNA binding C4 zinc finger 744 782 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Lal4g0638 1118 CDD TOP1Ac 173 708 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal4g0638 1118 Gene3D - 861 897 - -
Lal4g0638 1118 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Lal4g0638 1118 MobiDBLite consensus disorder prediction 848 872 - -
Lal4g0638 1118 SMART toprim5 7 142 IPR006171 -
Lal4g0638 1118 Pfam Toprim domain 9 153 IPR006171 -
Lal4g0638 1118 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Lal4g0638 1118 ProSiteProfiles Zinc finger CCHC-type profile. 871 886 IPR001878 GO:0003676|GO:0008270
Lal4g0638 1118 SMART topIaneu2 292 638 IPR003602 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0638 Lal-Chr4 4748914 4771426 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0638 K03165 - tcc:18611919 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0638 4 4748914 4771426 Lal4g0638 4 4748914 4771426 ECH