Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0594 ATGGCTGAAGACAGCCCGTGCGGTGGTGGGTTTTCAGCTGGTCTGGCACTGATATTGGATGGTGATGACAGTAAAAAGAATTTGTCGAAAGCTCGACTTCTTTCTTCTTGTGATGATATGGGTCTACAATCTGTGGAGCGAACCCTTGAATATGTTTTCGGCCTCCCCAATAGATCGCTCAACCCATTGACTGGTCCAATCGACCACAACTTAATTCGCACTGTCATAAGGAATGATTTCTCGAGATATAATATGGAATTGGGTGATTCATTTAATGAAAGAGATGGAATTGGTGTTGGTAAAAATGGCAGTGGGCCTGATGTTGTAGGATTAGATGAATTCAGTATCTGTGGTGATATTAAAATCATCAAGTCACCATTTTTTATAGAGAGCTTGGCAATGTTCAGTAGTGCCAGGGCTAATGCTTGTGTTTGGCAAGGAAAATGGATGTATGAAGTTATGTTAGAAACATCTGGTATACAGCAGCTTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGTGTTGGTGATGCTGATGATTCATATGCATATGATGGGAGAAGAGTTAGCAAATGGAACAAGGACGCAGAGACATATGGTCAGTCATGGGTTGCTGGAGATGTCATTGGATGTTGCATAGATTTAGATCGCGATGAAATACTATTTTACAGGAATGGGAATTCACTTGGGGTGGCATTTCGTGGAATTCAAAAAATGGGTCCTGGTTTTGGTTATTATCCTGCAATTTCTCTTTCCCAGAGTGAAAGATGTGATTTGAACTTTGGGGCCAGACCCTTTAAGTATCCCATTGAAGGCTACCTTCCTCTTCAGGCACCTCCCTCTAAAATCTACTTCTTCACCCGGTTGCTGCAATGTTGGTCAAGGCTGTTGGACATGCATTCGGTGGGACGGGCCGAGCATTCTTTAGTTCAGAAATTGAGAAGAGTGAGGAGGTTAGATTCATTAGAAGAAATTTTCCATCCCGCCTCCTATGCAATATGTGAGGAATTATTCTCTATTCTGGAAGCAGATATTGGGAACATAGAGTATATGGTTTGGGGTCCATTTTTATCTTTCATGTTTGAAGTTTTTGAATTGCATGCACCCCATGATTATTCAAGCTTGGATAAAATGGTTGGAGCACTGCTACAATTCGAAGGATCACATGTGCTATTTGAGCACATCATAAATGCTCTTTCGTGTGGTTGCAAAACAGCCTCATTAGTTCTAACTGAATGTCCTTACTCAGGATCATATTCTCATCTTTCGTTGGCATGTCATCTATTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAGTCACCGGATTTTGAATTTTTGTTTGAAGGATTCCTGTCACAAAAGACTCCGAACAAGCAGGATCTTGACTCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGTGTCTTGTGAAGGTAACATGATATTGACAACCACAGCTTTGTCTGAATCAATCAGCAAGGCCTCCAATTCAGGTTACACTGTAGAAAGGAGAGCGATAGTAAGGGCAGATTGGGGAACGAGTTGGGAGATTGAGGAGAAGCATAGGGCCCTTTGCCGCTTGGTGATACAATTTATACCACCGTCAGCACCTCCCCAGTTACCTGGAGCAGTGTTCCGAACATTTTTACAAAGCCTTCTACTGAAGAACAGAGGAGCAGAACGAAATGTCCCACCTCCTGGAGTTTCTAGCAATTCCGTTCTTGTTTCAACTTATTCAGTTGTACTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGATATCTGTGGCTGGTTAAATAGCGGCAAAGTGGATGTTGGTTTCCTTCACAGAGGTGGTCAACAAGGTTTTCCTGTACAATTGTTTCTAAAAAATGACCCCCATAGAACTGATAATTCCAGGCTTGGAGGATCGTATACCCATTTATTAAAGCTACACCCTGCAATTGATCATGAAATGGAAGTGGTTCTATGGGATGAAGGTTGCATGGATAGTGAAGAAACCAGAGTAACTCATTCTACCAGGCAGAAGCCATGCTGTTGTTCTAGCTATGACTCTGATTTCACAAGAAACTTGAAGATTCCAGCTAAATTTATGGCCAAAGGTTCCAAGGGTCATAGTAGCTCTATTCCAGAAAGACCTGCTCATGTTGTTTCCGAATGCAGTGATGGGAATTTGAATGATGAGATAACAGATAAACCTAGCTCCGGCGATCAGTCTGAACCTGAGTATGGTTATCGCCATGTGCACCATATGAAATCTATACCGAAGGATACTAATATAATTACAGCCATGCTACAAGAAGAAGAACTACTCGATGCTTTGCTGTGGTTGTATCATATTGGTCTTGCGCCGAATTTTAAGCAGGCATCGTACTACGTGACTCATCAGGCACAGTCAATATCCCTCTTGGAGGAAACTGATAAACAAATAAGAGATGGAGATTGCAGCGAGAAATTGAAGCATTTGAAAGAAACTCGTAGTGAACGTAGAGAAGAGGTTACCGATTGTGTCAGGCATTGTGCTTGGTATCGTATCTCTCTATTTTCTCGATGGAAGCAGAGAGGAATGTACGCAATGTGCATATGGGTTGTGCAATTGTTGCTGGTTCTTAGCAATATGGATTCGGTTTTTGTCTTCATCCCTGAATATTATCTGGAAGCTCTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCATTTGTTTCATCCACAATTTTCATCAAGCGAGGACTTGCTTCATTTGTTACCTTTGTTGTTACTCATTTCAACGATCCAAGAATATCAAGAGCTGATCTTAGGGATCTTCTTCTTCAGTCTATATCCGTCCTGGTGCAATACAGGGAGTATTTGGAAGCTTTTGAAAGCAATGAGGCAGCTATCCAAAGGATGCCAAAAGCTTTACTATCAGCATTTGATAACAGATCTTGGATCACGGTAACAAACATATTTTTGCGATTATGCAAGGGATCTGGTTTTAGTTTTTCAAAGAATGGAGAATCATCTTCGTCATCAGTTCTTTTCCATCGGTTGCTTAAAGAAGCTTGCATAAATGATAAAGGGTTATTTTCATCTTTTCTGAACCGTCTATTCAATACACTAAGCTGGACCATGACTGAATTTTCAGTTTATGTTCGAGAAATGCAAGAAAAGTACCAGGTAACAGAGTTTCAGCAAAGGAAATGCTGTGTCATATTTGATCTTTCATGTAATCTTGCAAGGATTCTAGAGTTCTGCACACATGAGATTCCCCAGGCATTCTTGTCTGGATCCGATACAAACCTACGGAGGCTGACTGAGTTGATTGTATTTATATTAAATCACATTAGTTCTGCAGCCAGTGCTGAATTTATTGACTTGTCTCTTAGACGGCATAGCCAATCTTCAGAGAAAGTAAATCGAGGCATGATATTGATACCTCTTACAGGGATCATCTTAAATTTATTGGACACTACTAATTTAGAAGAATATCGAGAGAAGAATGATCTTTTGGATGTCTTTGCAAGCATGGATTGTCCAGATAATGTTCATTATGGATTCCAGAATCTTCTGGATTATATCTGTGATGGATCTTTTCACGGGCAAGCTTTTTCAGCAAAATATGAGCAGCTAGAGAACTTTCACAGCCTCCTTACTTTCCGTGCCACGATACAACACAATAAAGTGGATGGTGCGGCAGATATCGTTCCGGATGATAGCCTGTGCTGCATATGTTACACATGTGAAGCAGATGCCCAGATTGCACCTTGTTCACATAAGTCTTGTTATGGCTGTATAACCAGGCATCTTCTGAACTGCCAGAGATGTTTCTTTTGCAATGCAACAGTAACAGATGTTAGCAGAATTGTTAAGAAGACAGGCTAA 3888 0.4118 MAEDSPCGGGFSAGLALILDGDDSKKNLSKARLLSSCDDMGLQSVERTLEYVFGLPNRSLNPLTGPIDHNLIRTVIRNDFSRYNMELGDSFNERDGIGVGKNGSGPDVVGLDEFSICGDIKIIKSPFFIESLAMFSSARANACVWQGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVAGDVIGCCIDLDRDEILFYRNGNSLGVAFRGIQKMGPGFGYYPAISLSQSERCDLNFGARPFKYPIEGYLPLQAPPSKIYFFTRLLQCWSRLLDMHSVGRAEHSLVQKLRRVRRLDSLEEIFHPASYAICEELFSILEADIGNIEYMVWGPFLSFMFEVFELHAPHDYSSLDKMVGALLQFEGSHVLFEHIINALSCGCKTASLVLTECPYSGSYSHLSLACHLLRREELMVLWWKSPDFEFLFEGFLSQKTPNKQDLDSMIPTVWWPGSCEDVSCEGNMILTTTALSESISKASNSGYTVERRAIVRADWGTSWEIEEKHRALCRLVIQFIPPSAPPQLPGAVFRTFLQSLLLKNRGAERNVPPPGVSSNSVLVSTYSVVLHFLSEGFALGDICGWLNSGKVDVGFLHRGGQQGFPVQLFLKNDPHRTDNSRLGGSYTHLLKLHPAIDHEMEVVLWDEGCMDSEETRVTHSTRQKPCCCSSYDSDFTRNLKIPAKFMAKGSKGHSSSIPERPAHVVSECSDGNLNDEITDKPSSGDQSEPEYGYRHVHHMKSIPKDTNIITAMLQEEELLDALLWLYHIGLAPNFKQASYYVTHQAQSISLLEETDKQIRDGDCSEKLKHLKETRSERREEVTDCVRHCAWYRISLFSRWKQRGMYAMCIWVVQLLLVLSNMDSVFVFIPEYYLEALVDCFHVLRKSDPPFVSSTIFIKRGLASFVTFVVTHFNDPRISRADLRDLLLQSISVLVQYREYLEAFESNEAAIQRMPKALLSAFDNRSWITVTNIFLRLCKGSGFSFSKNGESSSSSVLFHRLLKEACINDKGLFSSFLNRLFNTLSWTMTEFSVYVREMQEKYQVTEFQQRKCCVIFDLSCNLARILEFCTHEIPQAFLSGSDTNLRRLTELIVFILNHISSAASAEFIDLSLRRHSQSSEKVNRGMILIPLTGIILNLLDTTNLEEYREKNDLLDVFASMDCPDNVHYGFQNLLDYICDGSFHGQAFSAKYEQLENFHSLLTFRATIQHNKVDGAADIVPDDSLCCICYTCEADAQIAPCSHKSCYGCITRHLLNCQRCFFCNATVTDVSRIVKKTG 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0594 1295 Gene3D - 107 290 IPR043136 -
Lal4g0594 1295 SUPERFAMILY Concanavalin A-like lectins/glucanases 128 281 IPR013320 -
Lal4g0594 1295 CDD RING-HC_RNF123 1241 1281 - -
Lal4g0594 1295 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 137 IPR045737 -
Lal4g0594 1295 SUPERFAMILY RING/U-box 1227 1285 - -
Lal4g0594 1295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1236 1292 IPR013083 -
Lal4g0594 1295 ProSiteProfiles Zinc finger RING-type profile. 1243 1277 IPR001841 -
Lal4g0594 1295 MobiDBLite consensus disorder prediction 706 749 - -
Lal4g0594 1295 CDD SPRY_RNF123 137 265 IPR035773 -
Lal4g0594 1295 Pfam SPRY domain 148 266 IPR003877 GO:0005515
Lal4g0594 1295 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 42 1294 IPR045129 GO:0004842
Lal4g0594 1295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 42 1294 - -
Lal4g0594 1295 SMART SPRY_3 146 268 IPR003877 GO:0005515
Lal4g0594 1295 ProSiteProfiles B30.2/SPRY domain profile. 76 269 IPR001870 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0594 Lal-Chr4 4321129 4332503 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0594 K12169 - gmx:100800617 2212.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0594 4 4321129 4332503 Lal4g0594 4 4321129 4332503 ECH