Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0542 ATGAACACCAAGATGCTATCCTCTGGAATCAGGTACTCAACATTGCCAAAGAATTATATCCGACCAGAATCCGAGCGACCTCGTCTTTCTGAAGTTTCTGAGTGTCAAAATGTTCCAGTCATCGACCTGGGTTCTCACAACCGAATCCAGATTCTGCAACAAATTGGTGATGCTTGCAAGTGCTATGGTTTTTTCCAGGTGATTAATCATGGGGTACCACTAGAAATAGTGAAGGAAATGGAAGAAGTGGCATATGAGTTCTTCAAGTTACCTATGGAGGAGAAGCTAAAGTTGTATTCAGATGATCCATCTAGGACAATGAGATTATCCACTAGCTTTAATGTGAATAAAGAGACAGTGCATAATTGGAGAGACTACCTTAGACTCCATTGTTATCCTTTGGATAAGTATGTGTCTGAATGGCCTTCTAATCCTCCAACATTCAAGGAAATTGTAACAAAGTACTGCAAAGAAGTTAGGGAATTGGGGTTCAGAATAGAAGAACAAATATCAGAAAGTTTAGACCTAGAAAAAGATTACATGAAGAATGTTTTAGGAGAACAAGGGCAACACATGGCAGTGAATTACTATCCAGCATGCCCAGAACCAGAACTTACTTATGGATTACCAGGACGCACTGACCCAAATGCACTTACAATTCTACTACAAGACCAGAATGTTGCTGGACTTCAAGTCCTCAAAGATGGCAAGTGGGTCTCTGTTAATCCCTACCCTGATGCATTTGTTATTAACATAGGGGATCAACTACAGGCTTTGAGTAATGGGATTTATAAGAGTGTTTGGCACCGAGCTGTTGTGAATGTTGATGAGCCTAGACTTTCTGTGGCTTCATTTCTTTGTCCATGTGATGAGGCATTAATAAGCCCTGCAAAACTAATCACAGAAGATAGAACTGGAGCCATATACAGGGGATATACATATGCAGAATACTATAAGAAATTTTGGAGTAGGGACTTGGTGGAAAAAGAACACTGTTTGGAACTTTTCAAGAACAATTGA 1020 0.399 MNTKMLSSGIRYSTLPKNYIRPESERPRLSEVSECQNVPVIDLGSHNRIQILQQIGDACKCYGFFQVINHGVPLEIVKEMEEVAYEFFKLPMEEKLKLYSDDPSRTMRLSTSFNVNKETVHNWRDYLRLHCYPLDKYVSEWPSNPPTFKEIVTKYCKEVRELGFRIEEQISESLDLEKDYMKNVLGEQGQHMAVNYYPACPEPELTYGLPGRTDPNALTILLQDQNVAGLQVLKDGKWVSVNPYPDAFVINIGDQLQALSNGIYKSVWHRAVVNVDEPRLSVASFLCPCDEALISPAKLITEDRTGAIYRGYTYAEYYKKFWSRDLVEKEHCLELFKNN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0542 339 Gene3D - 3 326 IPR027443 -
Lal4g0542 339 Pfam 2OG-Fe(II) oxygenase superfamily 190 288 IPR044861 -
Lal4g0542 339 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 143 IPR026992 -
Lal4g0542 339 PANTHER PROTEIN DOWNY MILDEW RESISTANCE 6 1 337 - -
Lal4g0542 339 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 337 - -
Lal4g0542 339 SUPERFAMILY Clavaminate synthase-like 11 324 - -
Lal4g0542 339 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 188 288 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0542 Lal-Chr4 3948801 3954114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0542 2 331 Glycosyltransferase AT5G59530 31.977 1.11e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0542 K24028 - gmx:100782253 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0626 17 4449071 4454015 Lal4g0542 4 3948801 3954114 ECH
Lal4g0542 4 3948801 3954114 Lal4g0542 4 3948801 3954114 ECH
Lal17g0626 17 4449071 4454015 Lal4g0542 4 3948801 3954114 LSH