Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0480 ATGGCGGACGGCGCAGGAAAAGGTTTGGAATGCCAGAAGATTATGGATGGGAAGGCGAGTAACGGGAATGGAACGAAGAATGAAATTCCTTCCTGTTGTTTGAAGGCTAAATCTTCAGATCCTGAATTTGAGGCTAAGTGCCACTCCATTGTTGTTTCTGGGTGGTTCTCACCATCTCAAACTTGCTCTGGGAAATCTGGGAAGAATGTTTACTTTAACAACCCAATGTGGCCAGGAGAGGCCCATTCGATCGAAGTAGAAAAGATATTGTACAAGGAAAAGTCATTGTACCAAGAGGTTCTGGTTTTTGAGTCATCGACTTATGGGAAAGTGCTTGTACTTGATGGGATTGTTCAGTTGACTGAGAAGGACGAATGTGCATACCAGGAGATGATAGCTCATCTACCCCTTTGTTCAATTAAGTCCCCCAAAAATGTTTTAGTTGTTGGTGGCGGAGATGGTGGGGTTCTAAGGGAAATATCCCGGCACAGCTCTGTGGAGCATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCAAAGAAGTATTTTCCAGAGTTAGCTGTTGGGTTTGAAGATCCTCGAGTAAACCTGCATGTTGGTGATGCTATTGAATTTCTTAGATCTACTCCTGAAGGGAAGTATGATGCCATCATTGTTGATTCCTCAGATCCTGTGGGTCCTGCCCAGGAACTTGTAGAGAAGCCATTTTTTGAGACAATAGCTAAGGCATTACGACCTGCCGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACTCACCTTATTGAAGATATGATATCCATTTGTCGAGAAACATTCAAAGGTTCTGTTCGTTATGCATGGGCAAGTGTTCCAACATATCCAAGTGGTGTGATAGGTTTTCTTCTATGCTCAACAGCGGGACCGCCTGTTGATTTTGTAAATCCCATCAACCCCATTGAAAAGTTGGAAGGTGCTGATAAGCATGGAAGAGAGCTTCGCTTCTATAACTCGGAGATGCACTCAGCTGCTTTTGTGTTGCCCACATTTCTGAGGAGGGAGGTGCGCTTGCTCCGCGATTAA 1077 0.4355 MADGAGKGLECQKIMDGKASNGNGTKNEIPSCCLKAKSSDPEFEAKCHSIVVSGWFSPSQTCSGKSGKNVYFNNPMWPGEAHSIEVEKILYKEKSLYQEVLVFESSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIKSPKNVLVVGGGDGGVLREISRHSSVEHIDICEIDKMVIDVSKKYFPELAVGFEDPRVNLHVGDAIEFLRSTPEGKYDAIIVDSSDPVGPAQELVEKPFFETIAKALRPAGVLCNMAESMWLHTHLIEDMISICRETFKGSVRYAWASVPTYPSGVIGFLLCSTAGPPVDFVNPINPIEKLEGADKHGRELRFYNSEMHSAAFVLPTFLRREVRLLRD 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0480 358 Gene3D Spermidine synthase, tetramerisation domain 46 119 IPR037163 -
Lal4g0480 358 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 357 IPR001045 GO:0003824
Lal4g0480 358 Pfam Spermidine synthase tetramerisation domain 75 122 IPR035246 -
Lal4g0480 358 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 146 159 IPR030373 -
Lal4g0480 358 Gene3D Vaccinia Virus protein VP39 120 355 IPR029063 -
Lal4g0480 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 352 IPR029063 -
Lal4g0480 358 Pfam Spermine/spermidine synthase domain 125 310 - -
Lal4g0480 358 Hamap Polyamine aminopropyltransferase [speE]. 54 354 IPR001045 GO:0003824
Lal4g0480 358 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 304 IPR030374 -
Lal4g0480 358 CDD AdoMet_MTases 167 253 - -
Lal4g0480 358 PIRSF Spermidine_synth 42 357 IPR030668 GO:0006595
Lal4g0480 358 PANTHER SPERMINE SYNTHASE 1 357 - -
Lal4g0480 358 TIGRFAM speE: spermidine synthase 79 348 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0480 Lal-Chr4 3413293 3418732 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0480 K00797 - gmx:100815244 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0480 4 3413293 3418732 Lal4g0480 4 3413293 3418732 ECH