Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0442 ATGTACCCATTGTTGAAGCAAACACATGGTCCTCATTCTTCACTTTCTTATTGTTCTCACCTCATACACCAATGTACATCCCAAAAATCTATCAACTTTCTCAAAATCGTCCATGCCCATTTCCTCAAATTGGGTTTCAACACCTATGCTTATCTGGGTAATCGCTGTCTCAATCTCTACTTTGAGTTATGTAATGTTAACGATGATGCCTTCAAGGTGTTTGATGATATTACTGACAAGAATTCCACTTCCTGGAACATTTACTTAAAAGGGTTGCTTAAAAGTGGCAATCTTGGAAAGGCGTGCCACTTGTTTGATGCAATGCCTGTTAGAGATGTGGTTAGCTGGAACTCCATGATTTCAGGTTATACTCATTTTGGGTTTTATAATCATGCCTTGGAGCTGTTTGTTGAAATGCAAAATGCTGGTGTGAGGCCAAGTGGGTTCACCTTTTCAATTCTCGCGTCACTTGTGTCTAGCCCTTTTCATGCTAAACAGATTCATTGTAGGGTGATTCGAAGTAGTTTGGATTTGTCTAATGTAGTGCTTGGAAATTCGTTGATAGCCATGTATGGGAAACTTGGTATTGTTGATTATTGTTTTGGTTTGATTTTGACTATGAAAGAGTGTGATGTTATATCTTGGAACTCTTTGATTTGGGCTTGTCATAGAGTAGGATATGATCAACTAGCTCTAGAGCAGCTCCATCAGATGAGAGCTTTAGAGTTGTTACCTGACCACTTTACGTGTTCAATATTGATGAGTGTGTGTTCTAACTTGCGAAATTTGGAAAAGGGTAAGCAAATTTTTGCCTTTTGTTTCAAGGTGGGATTTGTTTATAATAGCATTGTGTCCAGTGCTGCTATTGATTTTTTTTCCAAATGCAACAGATTGGAGGATTCGGTCTTGATTTTTAAAGAACAAGATCAATGGGATTCAGCTTTATGCAATTCCATAATTTCAAGTTATGCTAGACATGATTTAGGGGAAGATGCTATGCATGTTTTTGTGCTGACCTTGAGGAAGAATATCAGGCCAACTGAATACATGTTTAGCAGTCTTCTGAGTTCTGTTTCCATTTTCTTACCATTAAAAATGGGAAACCAAATCCATTCTTTGGTTCATAAATTAGGTTTCGAGTCAGATGCAATTGTTGCCAGTTCACTTGTTGATATGTATGCAAAATTTGGATTTATTGATGATGCCTTGAATATCTTCAATGAAATGAAAATAAAAGATTTGGTATCGTGGAACACCGTTATGATGGGACTGACCTACAATGGCAAAGTTTCAATGGCCGTTGACCTTTTTGAGGAATTAATAAGAGAAGGTACAGCACCGGATCGAATAACACTTGCCGCAGTTCTACTGGCTTGCAACTATGGGAATTTTTATGATGAAGGAGTTCAAATATTTTCCTCAATGGAGAAGGAGTTTGGAGTTAAACCAGAGGGAGAACATTATGCTTATATTGTGGACTTGTTGAGTCGAGCTGGTAAACTCAAAGAGGCCATTGACATTTTAGAAACAATGCCGTATAGAACAAACTCTAACATTTGGAGGTCAGTTCTTTCTGCATGTGTAATTCATGAGGACTTGCGAGTTATTGAAACTGTTGCAAAGAAAATAATGGAGAGGGAACCACAGACACCCTTACCTTACTTGATGTTGGCTCAGGCATATGAGATGAGAGGTAGATGGGAGAGCATGATTCGAGTGAGGAAGGCTGTGGGACATAGAGGTCCGAATGAGCTCATTGGGTGCAGTTGGGTTGGGATAAACAACCGTGTATACTCTTTTGCATCAAACCTATTAGAGCATTATGGTGGCAAGGATCTATATCTGGTGTTGAATTTACTAATGTGGGAGATGGAGAGTGAAGATTGTCACGTCTAA 1896 0.3877 MYPLLKQTHGPHSSLSYCSHLIHQCTSQKSINFLKIVHAHFLKLGFNTYAYLGNRCLNLYFELCNVNDDAFKVFDDITDKNSTSWNIYLKGLLKSGNLGKACHLFDAMPVRDVVSWNSMISGYTHFGFYNHALELFVEMQNAGVRPSGFTFSILASLVSSPFHAKQIHCRVIRSSLDLSNVVLGNSLIAMYGKLGIVDYCFGLILTMKECDVISWNSLIWACHRVGYDQLALEQLHQMRALELLPDHFTCSILMSVCSNLRNLEKGKQIFAFCFKVGFVYNSIVSSAAIDFFSKCNRLEDSVLIFKEQDQWDSALCNSIISSYARHDLGEDAMHVFVLTLRKNIRPTEYMFSSLLSSVSIFLPLKMGNQIHSLVHKLGFESDAIVASSLVDMYAKFGFIDDALNIFNEMKIKDLVSWNTVMMGLTYNGKVSMAVDLFEELIREGTAPDRITLAAVLLACNYGNFYDEGVQIFSSMEKEFGVKPEGEHYAYIVDLLSRAGKLKEAIDILETMPYRTNSNIWRSVLSACVIHEDLRVIETVAKKIMEREPQTPLPYLMLAQAYEMRGRWESMIRVRKAVGHRGPNELIGCSWVGINNRVYSFASNLLEHYGGKDLYLVLNLLMWEMESEDCHV 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0442 631 Gene3D Tetratricopeptide repeat domain 365 461 IPR011990 GO:0005515
Lal4g0442 631 Gene3D Tetratricopeptide repeat domain 52 161 IPR011990 GO:0005515
Lal4g0442 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Lal4g0442 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Lal4g0442 631 PANTHER OS03G0435200 PROTEIN 1 629 - -
Lal4g0442 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Lal4g0442 631 Pfam Pentatricopeptide repeat domain 209 258 IPR002885 -
Lal4g0442 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 412 IPR002885 -
Lal4g0442 631 Pfam PPR repeat family 111 154 IPR002885 -
Lal4g0442 631 Pfam PPR repeat family 412 458 IPR002885 -
Lal4g0442 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Lal4g0442 631 PANTHER OS07G0578800 PROTEIN-RELATED 1 629 IPR045215 GO:0003723|GO:0009451
Lal4g0442 631 Pfam PPR repeat 491 511 IPR002885 -
Lal4g0442 631 Pfam PPR repeat 316 338 IPR002885 -
Lal4g0442 631 TIGRFAM PPR: pentatricopeptide repeat domain 316 347 IPR002885 -
Lal4g0442 631 TIGRFAM PPR: pentatricopeptide repeat domain 84 113 IPR002885 -
Lal4g0442 631 TIGRFAM PPR: pentatricopeptide repeat domain 114 147 IPR002885 -
Lal4g0442 631 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Lal4g0442 631 Gene3D Tetratricopeptide repeat domain 221 362 IPR011990 GO:0005515
Lal4g0442 631 Gene3D Tetratricopeptide repeat domain 462 601 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0442 Lal-Chr4 3088806 3090701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0442 17 625 Glycoside Hydrolase AT3G49170 29.120 3.72e-85 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0442 - - gmx:102663822 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0442 4 3088806 3090701 Lal4g0442 4 3088806 3090701 ECH