Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0390 ATGGAAAACGCCGACGTTTTCTTAGGCTTACACGATTTCCTCGATCGCATGCGCCAACCCTCCGCTTCCGATTTCGTTAAATCTATCAAAAGTTTTATAGTATCATTTTCAAATAATGTTGCTGATCCAGAGAGGGATAGTGCATCAATACAAGAGTTCTTTTCCAATATGGAGGCAGCTTTTAGGGCTCATCCTCTTTGGGCTGGTTGCTCTGAAGACGAACTCGAAAGTGCCGGTGAAGGTCTTGAGAAGTATGTCATGACGAAGTTATTTTCCCGCGTGTTTGCTTCAGTTCCAGATGATGTAAAACTCGATGAACAACTTTACGAGAAGATGGCCTTGTTTCAACAGTTTATTCGACCAGAAAATTTGGATATCACACCAGCTTTTCAGAATGAAACATCATGGTTGCCTGGTTTTTACTGCAACTGTGGAGTCTTTGGTGTTGACCATAAACCCCTTGCACAGAAAGAACTACAGAAGATCAACATGTACAAGGCACCCAGAGACAAACTTGTTTGTATCTTGAATTGTTGCAAGGTTATCGGTAATTTGCTGCTTAATGCTTCTGTCACATCCAATGAGAATCCTCCAGGAGCTGATGAATTTCTTCCTGTGCTAATTTATGTTACCTTAAAGGCAAACCCTCCACAACTGCACTCAAATCTGCTGTACATACAAAGGTTTAGACACCAATCTCGCTTGGTCGGGGAAGCAGCATATTATTTTACAAACATGCTCTCTGCCGAGTCCTTTATCTCAAACATTGATGCAAAAGCCATTTCGATGGATGAAACTGAGTTTGAGAGAAACATGGAATTCGCTCGTGCCCTTCTTTCGGGGCTTTCTGTTGATACACAAGATCCAAGTTCACCTTATCCAAATTATGGACACCATCCAAGATCAGAACCTACTACTAAGCACAGAAATAAAGCCTTGAATGATAATAAGGACCCTATGTTACAAACTGTGTCATCGGCTGCAAAATCCAAAATTAAGAAAGTGACTTCCGAGGATGAGTTATTGATCACAGAAGTTCCATCCCTCTCGGATTTGGAGAATAAAGGGGCAAGTATGCTTTTAAAGGAGGACAAGGCGAATGAAGTTTTCACGGAGTATCCATATTTGTTTTCTAGTGTTGGTGATCTGACAGTAGGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGCATGTCTTTCCAAAGGGTTAGGTGTCTCTCCTACATCTCATCCTCCACCTACTCCAAAAAACAAAGCCCAGGACCATGTTGAAACCACAATAGAACCTTCAGATGATGAACCTATAGGTGCCAATGATAAATTAGAAGAATCTAATGACACAACAGAGGATAGTTCAGATAAAGTTTCACTTCTTGGGGAGAAAAAAATTGAATCTGATCTGCCACAGGATGATGCAGTTGCACCTAAGGGTGATACCAACACAGAAACCTCTAGTTAA 1476 0.4085 MENADVFLGLHDFLDRMRQPSASDFVKSIKSFIVSFSNNVADPERDSASIQEFFSNMEAAFRAHPLWAGCSEDELESAGEGLEKYVMTKLFSRVFASVPDDVKLDEQLYEKMALFQQFIRPENLDITPAFQNETSWLPGFYCNCGVFGVDHKPLAQKELQKINMYKAPRDKLVCILNCCKVIGNLLLNASVTSNENPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRHQSRLVGEAAYYFTNMLSAESFISNIDAKAISMDETEFERNMEFARALLSGLSVDTQDPSSPYPNYGHHPRSEPTTKHRNKALNDNKDPMLQTVSSAAKSKIKKVTSEDELLITEVPSLSDLENKGASMLLKEDKANEVFTEYPYLFSSVGDLTVGDVEDLLNNYKQLVFKYACLSKGLGVSPTSHPPPTPKNKAQDHVETTIEPSDDEPIGANDKLEESNDTTEDSSDKVSLLGEKKIESDLPQDDAVAPKGDTNTETSS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0390 491 PANTHER BNAC09G47180D PROTEIN 1 427 - -
Lal4g0390 491 Gene3D VPS9 domain 99 281 IPR037191 -
Lal4g0390 491 Pfam Vacuolar sorting protein 9 (VPS9) domain 155 257 IPR003123 -
Lal4g0390 491 ProSiteProfiles VPS9 domain profile. 102 262 IPR003123 -
Lal4g0390 491 SUPERFAMILY VPS9 domain 11 273 IPR037191 -
Lal4g0390 491 MobiDBLite consensus disorder prediction 427 477 - -
Lal4g0390 491 SMART vps9_2 151 270 IPR003123 -
Lal4g0390 491 Gene3D - 17 97 - -
Lal4g0390 491 MobiDBLite consensus disorder prediction 301 315 - -
Lal4g0390 491 MobiDBLite consensus disorder prediction 411 491 - -
Lal4g0390 491 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Lal4g0390 491 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 427 IPR045046 GO:0005085|GO:0016192
Lal4g0390 491 MobiDBLite consensus disorder prediction 288 319 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0390 K20131 - gmx:100810958 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0390 4 2679140 2684221 Lal4g0390 4 2679140 2684221 ECH