Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0346 ATGGCTAACCGCGTTTTCTCCGCCGGAATCAAACGCATCACTTTCATATTCGCCGCACGAAGCCATTGGAGCTCCCTCGCTTCTACGTCGGATCAGTCATTCCCGCACATCTACACTTTGAAGAACCGAATCTCAGGACTCAAATCCCCTACAAGAAGTGCAATTCCCGCGCTTCAAAATTGGTTGGATCAAGGCAACAAACTTTCACACTTCGAACTTAGACGCATTTCCAGGTCACTCCTAAAATCGAAGCGTCATCATCACGCGCTTGAGGACCGTAGTCGAGAAGTTTGTTTATCGCGGCCAATCGCGCCGCGGTACAGCGGTTACATCGCGGACGCGACGCTTCACACAAGTGAAACACCAAATTTGCCCCTCTCAGTTGCTCTCACCTTTTCGGGAGGTTTTCCTGATATCATAACCATTTTTAGGGTTTCAAGCATTTCCCTTTCACAAAAAACACACTCACTGCGGTGTAAAACCCTCACACTCACTCTCTTCCAGCCCGACGCTGCGGCAATTGTAGACATTTTTCTAGCCTCAGATGACAACATGAGGAGTGAGGTGAGATGTGGTTTATGCGATGAAGTCATTACTGGTGGGATTCCTAGAGAGAACAGGCTCGAGATTGGGACAAGTGGATTTGAAGATGTTTGGGCCAAGTGTTCCCTTGAACTTAAAAAGATGCTATTGGAGGGAGATGATGTTCAAGAAGAGGTACTAAAATGGATGGAAAACCAGAAGAACTTTCATCTAGTCCCTGCTGATCATGCTATGAAATTGGAAATGATCATTAAAATGTATGGTCTATTGGAAGCTGAAGAGTACTTTATGAGTATACCTGATTCAGCTTCGAAGAAAGCTGCTTGTCTCCCCCTCCTGCGTGGTTATGTAAGAGATAGGGACACTGGTAAAGCTGAGTCTTTCATGGTGAAGCTCTATGATCTGGGGCTAATGTTGAGCCCTCACCCTTATAATGAGATGATGAAATTGTATTTGGCCACATGTGAGTACAGTAAGGTACCCCTTGTTATTCAGCAAATGAAGCGAAATAGAGTACCTTGCAATGTTTTGTCCTACAATCTTTGGATGAATGCTTGCAGTCAGGGAGAAGGATATGGTGTTGCAGCTGTAGAGACGATTTTTAGAGTAATGCAAAATGATGAGAATATTGAAGTGGGATGGAGCAGTCTTGCTACTTTAGCCAGTGTCTACATTAAAGCAGGACAATCTGACAAAGCCATTCAGGTTCTGAGATATGCAGAAAAGAAACTATCTACCTGTCGCCGTCTTGGTTATTTCTTTCTCATAACACTATATGCCTCTTTGAAGGAAAAGGAGGGAGTATTGCGGCTATGGGAAGCTAGTAAGGCAGTTGGTGGAAGAATCAGTTGTGCTAACTACATTAGCATACTAACATGCATGGTGAAGCTTGGGGACATTGTACAAGCCAAGAGAATCTTCAGAGAATGGGAGTCTAATTGTCGGAAATACGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGCGGAATGGATTAATACAAGAAGCTGAAGCATTACATATCCATACATTGGAGAGGGGTGGTCGTCCAAACTATAAGACCTGGGAGATTCTCATCGAAGGATTTGTCAAAAACCAAAAAATGGATGAGGCTATTATTGCCATGAAGAGAGCTTTGGCTTTGTTAAAGGATTGTGATTGGAGGCCACCACAAGGACTTGTATTAGCCATTGCAGAGTATTTGGAGACACAAGGAAATTTTGACTATGCAAATGAGTATATTACAGAAGTCCACAATTTTGGTCTTGCAAATTTACCATTGTATAAAATATTGCTTAGAATGCACATTTCTGCTAACAAACCACCTTCCCATATCCTTAAAATGATGGAGCAAGATAAAGTTGAGATGGATGTTGAGACTCTTTCCATTCTTAACGCCTTCACTGGGTAG 1959 0.4298 MANRVFSAGIKRITFIFAARSHWSSLASTSDQSFPHIYTLKNRISGLKSPTRSAIPALQNWLDQGNKLSHFELRRISRSLLKSKRHHHALEDRSREVCLSRPIAPRYSGYIADATLHTSETPNLPLSVALTFSGGFPDIITIFRVSSISLSQKTHSLRCKTLTLTLFQPDAAAIVDIFLASDDNMRSEVRCGLCDEVITGGIPRENRLEIGTSGFEDVWAKCSLELKKMLLEGDDVQEEVLKWMENQKNFHLVPADHAMKLEMIIKMYGLLEAEEYFMSIPDSASKKAACLPLLRGYVRDRDTGKAESFMVKLYDLGLMLSPHPYNEMMKLYLATCEYSKVPLVIQQMKRNRVPCNVLSYNLWMNACSQGEGYGVAAVETIFRVMQNDENIEVGWSSLATLASVYIKAGQSDKAIQVLRYAEKKLSTCRRLGYFFLITLYASLKEKEGVLRLWEASKAVGGRISCANYISILTCMVKLGDIVQAKRIFREWESNCRKYDIRVSNVLLGAYVRNGLIQEAEALHIHTLERGGRPNYKTWEILIEGFVKNQKMDEAIIAMKRALALLKDCDWRPPQGLVLAIAEYLETQGNFDYANEYITEVHNFGLANLPLYKILLRMHISANKPPSHILKMMEQDKVEMDVETLSILNAFTG 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0346 652 Pfam Pentatricopeptide repeat domain 316 367 IPR002885 -
Lal4g0346 652 PANTHER OS02G0796400 PROTEIN 19 650 - -
Lal4g0346 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Lal4g0346 652 PANTHER OS12G0527900 PROTEIN 19 650 - -
Lal4g0346 652 Gene3D Tetratricopeptide repeat domain 403 586 IPR011990 GO:0005515
Lal4g0346 652 Pfam PPR repeat 504 524 IPR002885 -
Lal4g0346 652 Gene3D Tetratricopeptide repeat domain 225 373 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0346 Lal-Chr4 2320977 2329877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0346 239 572 EF-hand Containing Proteins AT1G02150 34.328 1.88e-69 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0346 - - gmx:100813805 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0346 4 2320977 2329877 Lal4g0346 4 2320977 2329877 ECH