Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0337 ATGGATGTTAAGTTCATCACTGCCTTGATAATTTTCTACCTGATTTATCTCACTACTACCACTTCCATTGACCCTTGTGCCTCTCAAACCGATGACTCAGACCTCAACATGATTCCCATCTACGGTAAATGCTCACCCTTCAGCCCACCAAACACAGGCTCATGGGCCAACACCCTCATCAACATGGCATCCAAAGACCCAGCCCGTTTGAAGTACTTGTCCACCCTTGTGGGCCAAAAAACAGCCACCTCTGCCCCAATTGCTTCGGGCCAGGCCTTCAACATCGGCAACTACATAGTCCGGGTAAAAATCGGAACCCCGGGACAACTACTCTTCATGGTCTTGGACACTAGCACCGATGAGGCCTTCGTCCCATGTTCGGGCTGCCAAGGTTGCACCGCCACCACTTTCTTGCCCAATGTGTCTAGTAGCTACAGCTCATTGGACTGCTCTATCCCACAATGTGGTCAAGTCCATGGGCTTCCTTGCCTGGCCGAAGGAACAGGCCCATGCTCCTTCAACCAATCCTATGCAGGATCCTCCTTCTCAGCAACACTAGCCCAAGATTCACTAAGATTAGCCACTTATGTCATTCCTAATTACTCATTCGGATGTGTCAATGTCATCTCTGGAAATTCTGTTCCACCCCAAGGGCTCTTGGGCTTGGGCCGCGGGCCTTTGTCATTGCTTTCACAATCTGGGACACTCTACTCAGGTGTATTCTCCTATTGCCTCCCGAGTTTCAAATCCTACTATTTCTCCGGGTCACTCAAACTCGGGCCTGTGGGCCAACCCAAGAACATAAGAACAACCCCACTTCTACGAAACCCACATCGACCTTCACTATACTACGTGAACCTTACGGGTATTAGTGTGGGCCACGTCCTCGTACCCATACCTAGCGAGTACCTCGCTTTTGACTCCACTACCGGATCAGGAACCGTCATTGATTCGGGCACGGTGATAACCCGGTTCGTTGAGCCCATTTACAACGCGGTGAGAGAGGAGTTCAGGAAGCAGGTGTCAGGCCCATTCTCAAGCCTAGGAGCATTTGACACGTGTTTCGTGAAGTCCTTCGAAACGGTGGCACCACCTGTTACGTTACACTTCCAAGGATTGAATCTGACGCTGCCATTGGAGAATAGTTTGATACATAGCAGTTCAGGTTCATTGGCTTGTCTTGCAATGGCGGCAGCACCCAATAATGTGAACTCAGTGTTGAATGTGATAGCCAACCTGCAACAACAAAACCTTAGGATTTTGTTTGATACTGTTAACAATAAGGTTGGTATAGCCCGTGAGCTATGTAACTAG 1314 0.4939 MDVKFITALIIFYLIYLTTTTSIDPCASQTDDSDLNMIPIYGKCSPFSPPNTGSWANTLINMASKDPARLKYLSTLVGQKTATSAPIASGQAFNIGNYIVRVKIGTPGQLLFMVLDTSTDEAFVPCSGCQGCTATTFLPNVSSSYSSLDCSIPQCGQVHGLPCLAEGTGPCSFNQSYAGSSFSATLAQDSLRLATYVIPNYSFGCVNVISGNSVPPQGLLGLGRGPLSLLSQSGTLYSGVFSYCLPSFKSYYFSGSLKLGPVGQPKNIRTTPLLRNPHRPSLYYVNLTGISVGHVLVPIPSEYLAFDSTTGSGTVIDSGTVITRFVEPIYNAVREEFRKQVSGPFSSLGAFDTCFVKSFETVAPPVTLHFQGLNLTLPLENSLIHSSSGSLACLAMAAAPNNVNSVLNVIANLQQQNLRILFDTVNNKVGIARELCN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0337 437 Pfam Xylanase inhibitor C-terminal 283 432 IPR032799 -
Lal4g0337 437 PANTHER ASPARTYL PROTEASES 8 437 IPR001461 GO:0004190|GO:0006508
Lal4g0337 437 PANTHER ASPARTYL PROTEASE AED3-LIKE 8 437 - -
Lal4g0337 437 SUPERFAMILY Acid proteases 91 436 IPR021109 -
Lal4g0337 437 Gene3D Acid Proteases 261 437 IPR021109 -
Lal4g0337 437 Gene3D Acid Proteases 75 260 IPR021109 -
Lal4g0337 437 ProSiteProfiles Peptidase family A1 domain profile. 98 432 IPR033121 -
Lal4g0337 437 Pfam Xylanase inhibitor N-terminal 98 260 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0337 Lal-Chr4 2251353 2252666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0337 89 437 Miscellaneous Gene Families AT1G77480 27.907 1.33e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0337 - - gmx:100788630 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0337 4 2251353 2252666 Lal4g0337 4 2251353 2252666 ECH
Lal17g0377 17 2523040 2524353 Lal4g0337 4 2251353 2252666 LSH