Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0328 ATGGATTCTGTTTCTTCAACCTCCGCCATTTTTGCGGCGCCTCCGTCACTCTCTTCATCGTTCTCCTCTCTCTCCACACCTCAAGCTTCATTCACATTCCTCCGTAGGATGAACCCTAGAAGAATGGAGCCTCTTCGTGCATCTCAGGTTGCCGCCGCCGCCGCCGCGAAGCCTAAGGAAGCTAAACTGTGGGGCGGAAGGTTCGAAGAAAGTGTAACCGATGCTGTTGAGAGATTCACTGAGTCGATCTCTTACGATAAGCAGCTCTACAAACATGATATTATGGGAAGTAAAGCTCACGCTTCAATGCTCGCTCAACAGGGTCTGATCACCTTAAGTGATAGGGATTCTATTATTGAAGGTCTAAATCAGATTGAAACACACATTGAGAATGGCGAGTTCAATTGGAGGACCGACCGAGAGGATGTGCATATGAACATTGAAGCAGCGCTTACCGATATGATTGGTGAGCCTGCCAAGAAGCTACACACAGCTCGCAGCCGAAATGATCAAGTTTTAACTGATTTTCGCCTTTGGTGTCGTGATGCCATTGATAAGATCCTTAAAAGCATGAAGCACCTTCAGGTCTCATTAGTGACTTTGGCTTTGAAGAATGATGGTCTTATTGTTCCTGGTTATACTCATCTGCAGCGTGCACAACCGGTTTTGTTGCAACACCTTCTTCTGGCTTATGTAGAGGAGATTGAGCGTGATGCTGGTCGTTTGGTAGATTGTAGAGCTAGGATGAATTTTTGTCCCTTAGGGGCTTGTGCTTTGGCTGGTACAGGGCTTCCTATTGATCGATTCATGACTTCGGATGCCTTGGGATTTACAGCTCCCCTGAGGAATAGTATCGATGCAGTTTCAGATCGAGATTTTGTTCTGGAGTTTCTTTCCGCCAATGCCATCACAGCAGTGCATCTTTCTCGGCTTGGTGAAGAATGGGTATTGTGGGCTTCGGAGGAATTTGGATTTATCACACCAAGCGACTCTGTTTCAACTGGAAGTAGTATAATGCCTCAGAAAAAGAACCCAGATCCAATGGAACTTGTTCGTGGGAAGTCTGCCAGAGTCATAGGAGACCTGGTTACTCTTCTCACATTATGCAAAGGACTTCCTCATGCTTATAATCGTGATCTGCAGGAAGACAAAGAACCAGTATTTGACAGCGTCAAAACGATTTTGGGGATGCTTGAGGTATCAGCAGAGTTCGCACTTAACATTACTTACAATCGGGAAAGAATACAAAAGGCTTTACCTGCTGGTCATCTTGATGCAACAACACTTGCTGATTATCTTGTTAAGAAGGGAGTGCCATTTAGGACATCTCATGATATCGTTGGAAGAGCCGTTGCATTATGTACGTCGAAGAACTGCCAACTGCTGGACTTGAGTCTTGACGAGCTGAGAAGTATAAATACAGTCTTTGACGAGGATGTGTATGAATTTCTCGGAGTAGAAAATTCGATCCAGAAGTTTAGCTCTTATGGTTCCACCGGGTCAGCATGTGTTGCCAGCCAACTTGATTATTGGATAAAAAAGCTTGAAACCAATTGA 1557 0.4502 MDSVSSTSAIFAAPPSLSSSFSSLSTPQASFTFLRRMNPRRMEPLRASQVAAAAAAKPKEAKLWGGRFEESVTDAVERFTESISYDKQLYKHDIMGSKAHASMLAQQGLITLSDRDSIIEGLNQIETHIENGEFNWRTDREDVHMNIEAALTDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDKILKSMKHLQVSLVTLALKNDGLIVPGYTHLQRAQPVLLQHLLLAYVEEIERDAGRLVDCRARMNFCPLGACALAGTGLPIDRFMTSDALGFTAPLRNSIDAVSDRDFVLEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPHAYNRDLQEDKEPVFDSVKTILGMLEVSAEFALNITYNRERIQKALPAGHLDATTLADYLVKKGVPFRTSHDIVGRAVALCTSKNCQLLDLSLDELRSINTVFDEDVYEFLGVENSIQKFSSYGSTGSACVASQLDYWIKKLETN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0328 518 PRINTS Fumarate lyase superfamily signature 162 180 IPR000362 -
Lal4g0328 518 PRINTS Fumarate lyase superfamily signature 207 225 IPR000362 -
Lal4g0328 518 PRINTS Fumarate lyase superfamily signature 291 318 IPR000362 -
Lal4g0328 518 PRINTS Fumarate lyase superfamily signature 335 351 IPR000362 -
Lal4g0328 518 Pfam Argininosuccinate lyase C-terminal 425 490 IPR029419 -
Lal4g0328 518 Hamap Argininosuccinate lyase [argH]. 62 513 IPR009049 GO:0004056|GO:0042450
Lal4g0328 518 SUPERFAMILY L-aspartase-like 63 515 IPR008948 GO:0003824
Lal4g0328 518 Gene3D Fumarase/aspartase (Central domain) 179 508 - -
Lal4g0328 518 Gene3D - 420 492 - -
Lal4g0328 518 Pfam Lyase 66 360 IPR022761 -
Lal4g0328 518 CDD Argininosuccinate_lyase 82 515 IPR009049 GO:0004056|GO:0042450
Lal4g0328 518 PANTHER ARGININOSUCCINATE LYASE 49 515 - -
Lal4g0328 518 PRINTS Argininosuccinate lyase family signature 161 183 - -
Lal4g0328 518 PRINTS Argininosuccinate lyase family signature 202 222 - -
Lal4g0328 518 PRINTS Argininosuccinate lyase family signature 253 269 - -
Lal4g0328 518 PRINTS Argininosuccinate lyase family signature 291 315 - -
Lal4g0328 518 PRINTS Argininosuccinate lyase family signature 335 351 - -
Lal4g0328 518 PRINTS Argininosuccinate lyase family signature 370 389 - -
Lal4g0328 518 PANTHER ARGININOSUCCINATE LYASE 49 515 IPR009049 GO:0004056|GO:0042450
Lal4g0328 518 TIGRFAM argH: argininosuccinate lyase 63 510 IPR009049 GO:0004056|GO:0042450
Lal4g0328 518 Gene3D - 82 289 IPR024083 -
Lal4g0328 518 ProSitePatterns Fumarate lyases signature. 335 344 IPR020557 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0328 Lal-Chr4 2185312 2189904 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0328 K01755 - gmx:100796544 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0328 4 2185312 2189904 Lal4g0328 4 2185312 2189904 ECH