LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal4g0296	ATGGGATTGCTTCACCTTAGGCTCACTTATAATTACACTTCTTCTTCTTCTATTCACTCTCCTCATTTCTTCATCAATTCACCCATCAAGCTTTCTTCTTCTCAAGCTGGTGGCAGAGAAGGTACTTTCAATTCTGAGAGGATACCTTCCCTTTCAACGGTTTATGAGGAAGTGGAAACTTCTCATAAATGCTTTCAAAGGGTATTCACTTGTTTTTCATCAGCCTCGGGTATCTTGGATAATGATTCTTTAGAAAGACAAGAAATTAAGGTAAACAAAGGAAAGAGGTCACCGAGTAGTGTGCATGAAGTGATTGATGATACCCGAATGCCTTTCGGAGAAGAGATATCTACAGCCTCGATGAAGTATCAAACTTTCAGAGCAATGCATTTTCGTTTGTTATTGGAAAATCTTGGTACTTTGGAAGAAACTTTTGCTGATTCTGAAGCACAGAAGTTGAGAGATGATATTATGTTGCAACTAGGAAAGCTTGGAGCTCTAGAATTTTTCGAGGTATGTCTGTCTAGAGCTATTGAACCCTCGCGTGTCTTGGATTTTGCAAATGGGCATCCTAATCAATTTGGAGAGCAACGGAAAAACAGCAGAGTAGATGAATACATGGATAAAGTTGTTGTTCATTCTAGTCGGAAAAAGCAAAATAGAACAAGAAGAAAGAGAGCATTTACTGCAACAGAAATTTTGTCTCGATCATTGCCTTTGAAGGCTGATCAGGAAGAGCTGTTGTGTGTGCAAACTTCTTCTGTAAGAAGAGAATCAAATGGTAAAAATAGAAGAATAGTGGTTGCTAGAAGGGAGGCTGAAATGTCAAAAGCAGTAAAGGTACTTGCAGAGTTGGAGAAAATTAGTGCAGCAATAGAAGATGATACCAAGCAAGCAGCGAGCTTGAGTAACTGGGCAGAAGCAGCTGGAGTTGATGAGCAGGTGCTTAAGCAGAAATTACTTTATGGCCAGTATTGTCGGGACGAGCTTATACGAAGTACCCGTCCCTTAGTTCTATACATTGCTAGGAAATACAAGGGTATGGGAATAGCAATGGAAGATTTGCTTCAGGCAGGATATGTAGGTGTTCTCCAAGGTGCAGAGAGATTTGACTGTACAAGGGGGTACAGATTCTCAACGTATGTGCAGTACTGGATAAGAAAATCAATGTCAAGAATGGTGACACGATATGCTCGAAGTATTGTAGTCCCTTGGTCATTGAGCAAGGCAATAAATCAGATACAGAAAGCACAAAAATCCTTGAAAAATGCCTGTATGAAATGCCCGGATGATTATGAAATTGCAAAGATGACGGGTCTTTCTCTGGATAAAATTAGATCAGCTAGCAATTGTTTGCGAGTTGTTGCTTCAATTGATCAGAAGGAATTTATGCCGGATACGGCAGTAGGGAGTCCTGAAGAAGCTGTCATGAAGCAGCACATGAGAAAAGACATATATGATCTCCTGAATTGCTTGGATTCTAGAGAAAGACAAATATTAATCCTACGGTTTGGCCTAATTGATCATCAACCCAGGTCTCTTGAGGATATAGGGAGGCTTTTCAAAGTTAGCAAAGAGTGGATAAGGAGGTTAGTGAAGAATGCTCTATCAAAATTACGGGACAAATCATCCGTCTCGAATTTAAATGTTTATCTGGGTTTGGATTTTTAG	1671	0.3986	MGLLHLRLTYNYTSSSSIHSPHFFINSPIKLSSSQAGGREGTFNSERIPSLSTVYEEVETSHKCFQRVFTCFSSASGILDNDSLERQEIKVNKGKRSPSSVHEVIDDTRMPFGEEISTASMKYQTFRAMHFRLLLENLGTLEETFADSEAQKLRDDIMLQLGKLGALEFFEVCLSRAIEPSRVLDFANGHPNQFGEQRKNSRVDEYMDKVVVHSSRKKQNRTRRKRAFTATEILSRSLPLKADQEELLCVQTSSVRRESNGKNRRIVVARREAEMSKAVKVLAELEKISAAIEDDTKQAASLSNWAEAAGVDEQVLKQKLLYGQYCRDELIRSTRPLVLYIARKYKGMGIAMEDLLQAGYVGVLQGAERFDCTRGYRFSTYVQYWIRKSMSRMVTRYARSIVVPWSLSKAINQIQKAQKSLKNACMKCPDDYEIAKMTGLSLDKIRSASNCLRVVASIDQKEFMPDTAVGSPEEAVMKQHMRKDIYDLLNCLDSRERQILILRFGLIDHQPRSLEDIGRLFKVSKEWIRRLVKNALSKLRDKSSVSNLNVYLGLDF	556

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal4g0296	556	Coils	Coil	407	427	-	-
	Lal4g0296	556	PANTHER	RNA POLYMERASE SIGMA FACTOR RPO	18	552	-	-
	Lal4g0296	556	Pfam	Sigma-70 region 2	330	398	IPR007627	GO:0003700\|GO:0006352\|GO:0006355
	Lal4g0296	556	PANTHER	RNA POLYMERASE SIGMA FACTOR SIGC	18	552	-	-
	Lal4g0296	556	Gene3D	-	470	549	IPR036388	-
	Lal4g0296	556	TIGRFAM	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	327	542	IPR014284	GO:0003700\|GO:0006352\|GO:0006355
	Lal4g0296	556	Gene3D	-	195	399	-	-
	Lal4g0296	556	CDD	Sigma70_r4	482	540	-	-
	Lal4g0296	556	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	403	460	IPR013324	-
	Lal4g0296	556	SUPERFAMILY	Sigma2 domain of RNA polymerase sigma factors	270	399	IPR013325	GO:0003700\|GO:0006352\|GO:0006355
	Lal4g0296	556	Pfam	Sigma-70, region 4	488	540	IPR007630	GO:0003700\|GO:0006352\|GO:0006355
	Lal4g0296	556	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	461	544	IPR013324	-
	Lal4g0296	556	PRINTS	Major sigma-70 factor signature	354	367	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal4g0296	556	PRINTS	Major sigma-70 factor signature	378	386	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal4g0296	556	PRINTS	Major sigma-70 factor signature	492	504	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal4g0296	556	PRINTS	Major sigma-70 factor signature	513	528	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Lal4g0296	556	PRINTS	Major sigma-70 factor signature	528	539	IPR000943	GO:0003700\|GO:0006352\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal4g0296	Lal-Chr4	1931988	1936399	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal4g0296	K03093		-	gmx:100802522	660.988

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal4g0296	4	1931988	1936399	Lal4g0296	4	1931988	1936399	ECH