Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0268 ATGCTTCATTCATTCATGGGAATGGGAACTGGGCAATTTCTCCTTAGAGAACTTGAAAACCGTTTTGTTCCCAACTTAACAAATTGCGTCAAAATTGTGGAATTGAACAAGATTCATGCGCAGATTGTGAAACTCTCACTGTCACAAAGCAACTTTTTGGTCACAAAAATGGTGGATTTATGTGACAACTTCGGCAACTTAAGTTACGCGACCTTGCTCTTTGAACAACTCGTTGAACCAAACGTGTTTTCCTACAACGCAATCATCAGAACCTACACCCGTAATCATCAATATTCCTTAGCAATCAATCTGTTCAAACAAATGCTGAGTCATTCACGTGAACCAGGTCAAAATGCGATTTTCCCCGACCGATTCACGTACCCATTTGTGATAAAATCGTGTTCAGGGCTTTTGTTGCATCATCTTGGTCTGCAAATCCACACGCAAATTTGCAAATTAGGGTTCAAATCGCATTGTATAACAGAGAACGCACTGATTGATATGTACATGAAATGTGATGATTTGCGCAATGCATACAAAGTGTTCGAGGAAATGACTAATCGAGATGCTATATCTTGGAATAGCTTAATATTTGGCCACACTAGATTGGGGCAGATGGATAGTGCAAGGGAATTGTTTGATGAAATGCCTTGTAGGACAATTGTGTCTTGGACAACAATGATAACAGGGTATTGTAGAATAGACTATTACACTGATGCGTTGGACATTTTTCGTGAGATGCAAATGGTAGGTATTGAACCTGATGAGATTAGTATTACATCTGTACTGCCAGCATGTGCACAGCTTGGAGCTCTTGAGGTTGGGAAATGGATACACATGTACTCAGATAAAAAAGGGTTTTTGCAGAAGACTGGTATATGTAATGCACTGGTGGAAATGTATGCCAAGTGTGGTTGTATTGATGAAGCTAGGCACTTGTTTGATCAGTTGGTTGACAAGGATGTGATCTCTTGGAGTAGCATGATTGGAGGACTAGCTAATCATGGAAGAGGTTATGAAGCAATTGAACTCTTTCAAGATATGCAGAAAGCACAGGTGGTTCCTAATGGGATAACTTTTCTTGGTGTTTTGTCAGCTTGCTCTCATGCAGGCTTATGGAATGAGGGATTGAAATATTTTGATGTTATGAGGGTGAATTATCATATAGTGCCAGAAATTGAGCACTATGGTTGCTTGGTTGATCTTCTCGGACGCTCTGGATGCCTTGATCGAGCTCTTGACATGATACTGAAGATGCCCATGAAGCCAGATTCAAGGATATGGAACTCTCTGTTAAGCTTTTGTAGGATCCATCGGAATCTTGAGATTGCTGTTATTGCAATGGAAGAGCTTTTAGAGCTTGAGCCAGAGGAATCTGGGAATTATATTTTGCTTGCCAACATATATGCAGAACTTGGAAAGTGGGAAGGTGTATCAAATATTAGGAAACTCATAAGAAGCAAGAGGATAAAGAAAACCCCAGGATGTAGCTTGATTGAGGTCAACAATGTGGTTCAAGAATTTGTATCAGGTGACAATTCAAAGCCCTTTTCACAAGATGTCTTTTGGGTCCTAGAAATGTTGGCTTTACACCAAACTAGAATCAGTGACTTGATTGAACTTGCCTGA 1629 0.4009 MLHSFMGMGTGQFLLRELENRFVPNLTNCVKIVELNKIHAQIVKLSLSQSNFLVTKMVDLCDNFGNLSYATLLFEQLVEPNVFSYNAIIRTYTRNHQYSLAINLFKQMLSHSREPGQNAIFPDRFTYPFVIKSCSGLLLHHLGLQIHTQICKLGFKSHCITENALIDMYMKCDDLRNAYKVFEEMTNRDAISWNSLIFGHTRLGQMDSARELFDEMPCRTIVSWTTMITGYCRIDYYTDALDIFREMQMVGIEPDEISITSVLPACAQLGALEVGKWIHMYSDKKGFLQKTGICNALVEMYAKCGCIDEARHLFDQLVDKDVISWSSMIGGLANHGRGYEAIELFQDMQKAQVVPNGITFLGVLSACSHAGLWNEGLKYFDVMRVNYHIVPEIEHYGCLVDLLGRSGCLDRALDMILKMPMKPDSRIWNSLLSFCRIHRNLEIAVIAMEELLELEPEESGNYILLANIYAELGKWEGVSNIRKLIRSKRIKKTPGCSLIEVNNVVQEFVSGDNSKPFSQDVFWVLEMLALHQTRISDLIELA 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0268 542 Pfam E motif 438 500 IPR046848 -
Lal4g0268 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Lal4g0268 542 PANTHER OS05G0439300 PROTEIN 15 539 - -
Lal4g0268 542 Gene3D Tetratricopeptide repeat domain 141 275 IPR011990 GO:0005515
Lal4g0268 542 Pfam PPR repeat 163 188 IPR002885 -
Lal4g0268 542 Pfam PPR repeat 191 218 IPR002885 -
Lal4g0268 542 Pfam PPR repeat 395 420 IPR002885 -
Lal4g0268 542 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 15 539 - -
Lal4g0268 542 Gene3D Tetratricopeptide repeat domain 296 512 IPR011990 GO:0005515
Lal4g0268 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Lal4g0268 542 Gene3D Tetratricopeptide repeat domain 12 138 IPR011990 GO:0005515
Lal4g0268 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 219 IPR002885 -
Lal4g0268 542 Pfam PPR repeat family 220 267 IPR002885 -
Lal4g0268 542 Pfam PPR repeat family 80 134 IPR002885 -
Lal4g0268 542 Pfam PPR repeat family 320 368 IPR002885 -
Lal4g0268 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Lal4g0268 542 SUPERFAMILY TPR-like 84 476 IPR011990 GO:0005515
Lal4g0268 542 TIGRFAM PPR: pentatricopeptide repeat domain 293 322 IPR002885 -
Lal4g0268 542 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Lal4g0268 542 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Lal4g0268 542 TIGRFAM PPR: pentatricopeptide repeat domain 191 217 IPR002885 -
Lal4g0268 542 TIGRFAM PPR: pentatricopeptide repeat domain 83 115 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0268 Lal-Chr4 1728286 1729914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0268 57 528 Glycoside Hydrolase AT3G49170 32.347 3.19e-87 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0268 - - cam:101511241 824.698