Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0227 ATGGCTTTGCCGAATCAGCAAACCGTTGATTACCCTAGCTTCAAGCTCGTTATTGTTGGTGATGGTGGAACAGGAAAAACAACCTTTGTGAAAAGGCATCTTACTGGAGAATTCGAGAAGAAATATGAACCAACTATTGGTGTGGAAGTTCACCCATTGGATTTCTTCACAAATTGCGGCAAGATTCGATTTTACTGCTGGGATACTGCTGGTCAAGAGAAATTTGGTGGCCTTAGAGATGGCTATTACGGTCTCCATGTTTTCGTTGCCCTGGGGACGACTGTTGTTTCTGTAGGAATGCTAGATTTTAGTATCCATGGGCAATGTGCAATTATAATGTTTGATGTTACTGCCCGACTGACATACAAAAATGTTCCGACCTGGCATCGTGATCTTTGCCGCGTATGTGAAAACATTCCAATTGTTCTCTGTGGTAACAAGGTTGATGTGAAGAACAGGCAAGTTAAGGCAAAGCAGGTAACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAGATATCAGCTAAGAGCAACTACAACTTTGAGAAGCCTTTCTTATACCTTGCCAGAAAACTTGCTGGTGATCCCAATTTGCACTTCGTAGAATCTCCTGCATTGGCTCCACCTGAAGTTCAAATCGATTTGAATGCTCAGAAACAACATGAGGATGAGCTTGCTGCAGCTGCTAGTCAGCCGCTCCCTGATGATGATGATGATGCTTTTGACTGA 729 0.4294 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYGLHVFVALGTTVVSVGMLDFSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLNAQKQHEDELAAAASQPLPDDDDDAFD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0227 242 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal4g0227 242 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 151 169 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal4g0227 242 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 189 211 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal4g0227 242 ProSiteProfiles small GTPase Rab1 family profile. 8 230 - -
Lal4g0227 242 ProSiteProfiles small GTPase Ran family profile. 7 192 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal4g0227 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 214 IPR027417 -
Lal4g0227 242 Gene3D - 4 240 IPR027417 -
Lal4g0227 242 PANTHER RAN GTPASE 1 85 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal4g0227 242 PANTHER RAN GTPASE 103 242 IPR002041 GO:0003924|GO:0005525|GO:0006913
Lal4g0227 242 SMART ras_sub_4 11 195 - -
Lal4g0227 242 MobiDBLite consensus disorder prediction 217 242 - -
Lal4g0227 242 SMART ran_sub_2 19 241 - -
Lal4g0227 242 SMART rho_sub_3 16 191 IPR001806 GO:0003924|GO:0005525
Lal4g0227 242 CDD Ran 14 200 - -
Lal4g0227 242 Pfam Ras family 106 192 IPR001806 GO:0003924|GO:0005525
Lal4g0227 242 Pfam Ras family 15 83 IPR001806 GO:0003924|GO:0005525
Lal4g0227 242 SMART rab_sub_5 14 195 - -
Lal4g0227 242 PANTHER GTP-BINDING NUCLEAR PROTEIN 1 85 - -
Lal4g0227 242 PANTHER GTP-BINDING NUCLEAR PROTEIN 103 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0227 Lal-Chr4 1430179 1432815 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0227 K07936 - jre:109009774 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0227 4 1430179 1432815 Lal4g0227 4 1430179 1432815 ECH
Lal17g0243 17 1507087 1509388 Lal4g0227 4 1430179 1432815 LSH