Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0092 ATGATTTCTCAGTTTTTCGTGCTTTCACAGAGAGGCGACAACATCGTCTTCCGCGACTATCGTGGTGAAGTACAAAAAGGAAGTGCTGAAACGTTTTTCAGAAAAGTGAAATTCTGGAAAGAACACTCTGAAGATGAAGAAGGAGATGCTCCACCTGTTTTTAATGTAGATGGTGTGAACTACTTTCATGTGAAAGTGGCTGGTTTGCATTTTGTTGCGACAACTAGGATCAATGTTTCCCCTTCTCTTGTTCTCCAACTTTTACAAAGAATTGCACGTCTCATCAAAGATTACCTTGGTGTTCTTAATGAAGATTCTTTCCGAAAGAACTTCGTGCTCGTCTATGAATTGCTTGATGAAGTCATTGATTTTGGTTACGTGCAAACAACGTCTACTGAGGTTCTGAAGTCGTATGTTTTCAATGAGCCAATTGCGGTTGATACTGCACAAATGCCTCCCCTTGGTCCTGCTTCCATTTTTATGCAAGGGAACAAAAGGATGCCAGCTACAGCTATTACAAAATCTGTTCTTGCTAATGAACCCGGTGGTAGGAAGAGGGAGGAGATTTTTGTTGATGTAATTGAAAAAATAAGTGTCACATTCAACTCAAGTGGATTAATACTTACTAGTGAGATAGATGGCACCATTCAAATGAAAAGTTATCTTACCGGTAATCCAGAGATCCGACTTGCTCTCAATGAGGACCTGGGTATAGGAACAAGTGATTATCGAGGTTCAGGCGCTGTGATTTTAGATGATTGTAACTTCCATGAGTCCGTACACCTTGATAGTTTTGATGTTGACCGAACTTTGTCCTTGGTACCACCTGATGGTGAATTTCCTGTGATGAATTATCGTATGACTCAACAATTTAAGCCACCCTTTCGTATTAACGCATTGATTGAAGAAGCAGGACCCCTGAAGGTGGCCGAAGTGACCATTAAAGTGCGAGCTGACTTCAACTCAAGCATCAATGCCAACACTATTCTCATACAAATGCCGCTGCCAACATATACTGCTCGTGTTAATTTTGAGTTGGAAGCTGGAGCAGTTGGAAACACGACTGATTTTAAGGAAGCAAATAAAAGACTGGAATGGGGACTAAAAAAGATTGTTGGTGGATCTGAACATACTTTGAGAGCAAAGCTAACATTTGCACAGGAGTTACATGGAAATATCATGAAGGAAGCAGGTCCTCTTAGCATGACCTTCACTATACCTATGTATAATGCTTCAAGGCTTCAGGTGAAATACTTGCAAATAGCAAAGAAGTCGAAAGCACATAATCCATATCGATGGGTTAGATATGTAACCCAAGCAAACTCATATGTTGCACGATTGTAA 1344 0.4048 MISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEHSEDEEGDAPPVFNVDGVNYFHVKVAGLHFVATTRINVSPSLVLQLLQRIARLIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIAVDTAQMPPLGPASIFMQGNKRMPATAITKSVLANEPGGRKREEIFVDVIEKISVTFNSSGLILTSEIDGTIQMKSYLTGNPEIRLALNEDLGIGTSDYRGSGAVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQQFKPPFRINALIEEAGPLKVAEVTIKVRADFNSSINANTILIQMPLPTYTARVNFELEAGAVGNTTDFKEANKRLEWGLKKIVGGSEHTLRAKLTFAQELHGNIMKEAGPLSMTFTIPMYNASRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0092 447 Gene3D Mu homology domain, subdomain B 293 446 - -
Lal4g0092 447 Gene3D - 1 145 - -
Lal4g0092 447 Gene3D Mu homology domain, subdomain B 185 442 - -
Lal4g0092 447 SUPERFAMILY SNARE-like 1 143 IPR011012 -
Lal4g0092 447 ProSiteProfiles Mu homology domain (MHD) profile. 186 446 IPR028565 -
Lal4g0092 447 PANTHER AP COMPLEX SUBUNIT MU 2 447 - -
Lal4g0092 447 CDD AP4_Mu_N 3 146 - -
Lal4g0092 447 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal4g0092 447 PRINTS Clathrin coat assembly protein signature 104 131 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal4g0092 447 PRINTS Clathrin coat assembly protein signature 251 278 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal4g0092 447 PRINTS Clathrin coat assembly protein signature 365 376 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal4g0092 447 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 185 446 IPR036168 -
Lal4g0092 447 PIRSF AP_complex_mu 1 447 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lal4g0092 447 CDD AP-4_Mu4_Cterm 181 447 - -
Lal4g0092 447 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 447 - -
Lal4g0092 447 Pfam Adaptor complexes medium subunit family 185 446 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0092 Lal-Chr4 554926 558703 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0092 K12402 - gmx:100800985 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0092 4 554926 558703 Lal4g0092 4 554926 558703 ECH