Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0040 ATGGACCTTCGCTTACGGTTTCTCACCTCACTCTCTCTGTTACAGGCATGTCTCCTTTTATTATCATTAACAAAAGCAGACAATTTATCTACATCCCTTATGGCATCCCACGTTACAACATCGGGGGAAAGGCATTCTGAGAATTATTGTGCAATGTATGACATTTGTGGAGCACGTAGTGATGGTAAAGTATTGAATTGTCCACATGGTTCCCCAGCTGTGAAGCCTGATGATTTGCTCTCTTCGAAGATACAAAGTTTGTGTCCATCAATTACTGGGAATGTTTGTTGTACAGAAGCTCAGTTTGACACATTAAAGAAGCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCTGCATGCTTAAGAAACTTTTTGAATCTATTCTGCGAGCTTACATGTTCTCCAAATCAGAGTTTATTTATCAATGTGACTTCAACTGACAAGGTTGGTGGTAATTTGACAGCGAGTGGGATTGATTTTTTTGTAGCTGATGCTTTTGGTGAAGTGTTATACGAGTCCTGCAAGGAAGTAAAGTTTGGCACCACGAATTCTCGAGCTCTACAATTTATTGGTGCTGGTGCTCAAAATTTTATGGAGTGGTTTGCTTTTATTGGTAGAAAAGCGGACCCTAATGGTCCCGGTTCACCATATTCAATTGCATTCCATCGAAATGCAAGCAAATCATCTGGCATGGAACCTATGAATGTTTCAACTTATTCGTGTGGTGATATTTCTCTTGGCTGCTCTTGTGGTGACTGTCCTTCATCCTCAGTGTGCTCTAGTTCACCTTCAACGACCACCCATAAGAGGGACTCCTGCTCCATTAAAGTTGGGTCTTTAACGGTGAAGTGTGTTGATTTGATTTTAACAGTCTTATACATCATACTGGTTTCTGTGTTCTTGGGTTGGGGATTGTATCATCGGATAAGGGAAAGAAAACCAGCATCCCGAACGGGACCGGTGTCTAATATCATTAGTGGTAGTGTGCAGCATTCTTTAGATAGGGAGAAGGATGATAACCTCCCAACGCAGGTTCATGTTAGTATATACTATTTCTCCATTATAGTGACTACTGTCTTCCCCTTTAAAAAAAAAAAAACTTCTTTTCTTCCTTATGCGTGCTTGGTCAATTCTGACTTTGTTTTGCCTGATGTTGATGATCATAAGATGGTGCAAGATGATGCACTAAACAGAAATGGGATCCGTCTCTCAGCAGTGCAAGGGTGCATGTCCATATTTTACAGGAAATATGGATCATATGTAGCTAAGAATCCAATTACGGTATTGTCTTCATCGGTGGTCATACTTCTTCTACTCTGTATAGGTCTAATCCAGTTCAAGGTTGAAACACGACCTGAGAAGCTCTGGGTAGCACCTGGGAGTAAAGTAGCACGAGAGAAACAGTTTTTTGATAGCCACCTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAGTTCCAGATCATGTGAATAATACAGCACCAAGAATTGTGTCAAAAGACAACATTGAGTTTCTATTTGAAATACAAAAAAAGGTTGATGCAATCCGTGCTAATTATTCTGGCTCAATGATATCTCTCCAAGACATCTGTTTGAAGCCGCTGGACAAAGATTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAATGGACCCGAATAATTTCGGCGAATATGGGGGAGCTGATCATCTTAATTACTGTTTCGAGCATTATACCTCAGCAGACCAATGTATGAGCAGCTTTAAAGCTCCTCTTGATCCAAGCACAGTGTTAGGAGGTTTCTCTGGGAATGATTATTCTGCGGCATCTGCGTTTGTTGTAACTTATCCAGTAAATAATGCCAATGATGAAGAAGGTAATCAAACTGCTAAGGCAGTTGCTTGGGAGAAGGCCTTTATTCAGTTGGTGAAGGGTGAGCTTTTACCAATGGTGAAATCAAGAAATTTGACGCTTGCTTTTTCCTCTGAAAGCTCGATTGAGGAAGAGTTAAAAAGAGAAAGTACCGCAGATGCTATTACTATATTGATTAGCTATATTGTGATGTTCGCGTATATATCTCTTACTTTGGGGGACACACCACATCTTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTGCAGGGGTAATGCTTGTTATGCTGTCTGTCCTTGGATCAGTTGCATTTTTTAGTGCCCTTGGTGTAAAATCTACACTGATCATCATGGAAGTTATCCCATTTCTTGTTCTAGCTGTTGGTGTGGACAATATGTGTATACTTGTTCATGCCGTAAAAAGGCAACAAATGAATTTGCCTTTAGAAGGACGAATAAGCAATGCACTTGTGGAAGTTGGACCATCTATAACACTGGCCAGTCTGTCAGAGGTTTTAGCATTTGCAGTTGGAAGCTTTATTTCAATGCCTGCATGCCGTGTGTTCTCCATGTATGCTGCATTGGCTGTTCTTTTGGATTTTATCCTGCAAGTTACTGCTTTTGTTGCTCTGATAGTTCTCGACTCTTTGCGAGCAGAGGCTAAGAGAGTTGATTGTTTTCCATGCATAAAAGTGCGTTCAATGCGTGTGGATTTTGATAAAGGTGTTGGACAAAGTAAACCTGGTTTCTTGGCTCGATTTATGAAGGAGGTTCTTGCACCCATTCTGAGTATTTGGGGAGTAAAAATAGCTGTCATTGCTATTTTTACAGCATTTACATTGGCTAGCATTGCATTAAGCACTAGAATCGAACCTGGTTTGGCACAGAACATTGTTCTTCCTCGAGACTCATATCTTCAGGGGTATTTCAATAATGTTTCAGAATATCTCAGGGTTGGACCACCTTTGTATTTTGTAGTGAAGAACTATAACTACAGCTCTGAATCACTGCATACAAATCAGCTTTGCTCCATTAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAGAGCAGCCCTAGTACCAGACACAAGTTATATAGCCAAGCCAGCTGCTTCGTGGCTTGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTCATGAACGGGAGTTATTGCCCCCCTGATGATCAGCCTCCTTGTTGCGCTGCTGGTGAAGGTTCTTGTATTTCAGATGGAGTATGTAAAGATTGCACAACGTGTTTCCGTCACACAGATCTCCACAATGGTCGTGCATCTACAACACAGTTTAGGGAGAAACTGCCATGGTTTCTTAGTGCCCTGCCGTCTGCTGATTGTGCAAAAGGTGGTCATGGAGCTTACACAGGCAGTGTTGAACTGAAAGGCTATGAAAGTGGCATTATACAAGCATCATCATTCCGCACATATCATACCCCACTCAACAAGCAGAATGACTTTGTTAATTCAATGAGGGCTGCTCAAGAGTTTTGTTCGAGAGTTTCTGATTCTTTAAAGATTGAGATCTTCCCATATTCAGTGTTTTATATGTTTTTCGAGCAATACCTAAATATATGGAAAACTGCATTGGTCAACCTTGCTATAGCCATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACATCCAGTTTTTGGAGTTCAACAATCATTTTGTTGGTGTTGGTGATGATTGTCGTTGATCTTATGGGTGTGATGGCCATTCTAAAAATCCAGTTGAATGCTATTTCGGTGGTCAACCTTGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCTTTTACTGTAACAAGTGGAGGCAAAGATCGGCGTGTGAAGGAAGCTCTGGGTACAATGGGAGCTTCAGTCTTCAGTGGTATCACATTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAGGACAGAAGTTTTTGTGATTTATTACTTTCAAATGTACTTGTCGCTAGTACTCCTCGGCTTCTTGCATGGGCTGGTTTTCTTGCCGGTGGTATTAAGCATCTTTGGTCCACCTTCAAGATATATACACAATGAGCAAGGGGAAAATACTTCACCAAATTCTTCATAG 4014 0.4093 MDLRLRFLTSLSLLQACLLLLSLTKADNLSTSLMASHVTTSGERHSENYCAMYDICGARSDGKVLNCPHGSPAVKPDDLLSSKIQSLCPSITGNVCCTEAQFDTLKKQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSTDKVGGNLTASGIDFFVADAFGEVLYESCKEVKFGTTNSRALQFIGAGAQNFMEWFAFIGRKADPNGPGSPYSIAFHRNASKSSGMEPMNVSTYSCGDISLGCSCGDCPSSSVCSSSPSTTTHKRDSCSIKVGSLTVKCVDLILTVLYIILVSVFLGWGLYHRIRERKPASRTGPVSNIISGSVQHSLDREKDDNLPTQVHVSIYYFSIIVTTVFPFKKKKTSFLPYACLVNSDFVLPDVDDHKMVQDDALNRNGIRLSAVQGCMSIFYRKYGSYVAKNPITVLSSSVVILLLLCIGLIQFKVETRPEKLWVAPGSKVAREKQFFDSHLAPFYRIEQLILATVPDHVNNTAPRIVSKDNIEFLFEIQKKVDAIRANYSGSMISLQDICLKPLDKDCATQSVLQYFKMDPNNFGEYGGADHLNYCFEHYTSADQCMSSFKAPLDPSTVLGGFSGNDYSAASAFVVTYPVNNANDEEGNQTAKAVAWEKAFIQLVKGELLPMVKSRNLTLAFSSESSIEEELKRESTADAITILISYIVMFAYISLTLGDTPHLSSFYISSKVLLGLAGVMLVMLSVLGSVAFFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQMNLPLEGRISNALVEVGPSITLASLSEVLAFAVGSFISMPACRVFSMYAALAVLLDFILQVTAFVALIVLDSLRAEAKRVDCFPCIKVRSMRVDFDKGVGQSKPGFLARFMKEVLAPILSIWGVKIAVIAIFTAFTLASIALSTRIEPGLAQNIVLPRDSYLQGYFNNVSEYLRVGPPLYFVVKNYNYSSESLHTNQLCSISQCNSDSLLNEIARAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFMNGSYCPPDDQPPCCAAGEGSCISDGVCKDCTTCFRHTDLHNGRASTTQFREKLPWFLSALPSADCAKGGHGAYTGSVELKGYESGIIQASSFRTYHTPLNKQNDFVNSMRAAQEFCSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNLAIAIGAVFIVCLVITSSFWSSTIILLVLVMIVVDLMGVMAILKIQLNAISVVNLVMSVGIAVEFCVHMTHSFTVTSGGKDRRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFQMYLSLVLLGFLHGLVFLPVVLSIFGPPSRYIHNEQGENTSPNSS 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0040 1337 Pfam Patched family 1109 1317 IPR003392 GO:0016021
Lal4g0040 1337 Pfam Patched family 499 952 IPR003392 GO:0016021
Lal4g0040 1337 ProSiteProfiles Sterol-sensing domain (SSD) profile. 674 837 IPR000731 -
Lal4g0040 1337 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 6 337 - -
Lal4g0040 1337 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 388 1333 - -
Lal4g0040 1337 PANTHER PATCHED FAMILY PROTEIN 388 1333 - -
Lal4g0040 1337 PANTHER PATCHED FAMILY PROTEIN 6 337 - -
Lal4g0040 1337 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 652 837 - -
Lal4g0040 1337 TIGRFAM 2A060601: Niemann-Pick C type protein family 50 1318 IPR004765 GO:0005319|GO:0016021
Lal4g0040 1337 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1126 1318 - -
Lal4g0040 1337 Pfam Niemann-Pick C1 N terminus 48 277 IPR032190 -
Lal4g0040 1337 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1125 1323 - -
Lal4g0040 1337 Gene3D Multidrug efflux transporter AcrB transmembrane domain 627 842 - -
Lal4g0040 1337 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0040 Lal-Chr4 235925 253931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0040 44 1337 Miscellaneous Gene Families AT1G42470 69.784 0.0 1806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0040 K12385 - gmx:100784611 2044.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0040 4 235925 253931 Lal4g0040 4 235925 253931 ECH