Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0004 ATGTCGTCGTGTTTATTGCCGGATACTTTCACTTTCCGATACGCTCTTCTTCCATCATCATCATCATCATCATCATCATCATCAATAAAAAGCAGAGATATTATTAGTTGTTTCCAGCCCCAATGTGTTTTATCAACAACACCTTCACCCACTTCTCTTACTTTGGAAAAATTGGCACTTTCTTCATCAACAACTCATTCTCATCCATCCCCATATCTTCCTTCTTCTACACAGGCAAACTTCAAAGCAACCTTATCTACAGAATCACTTCTTACTAGTGAAGAAAATGTAATAGCTGCTGCTGCTTCTGAAGCTGTTGCTCTTGCTAAAGCAGCTTTGAAAGTTGCAAAGGTTGCTGCCCTACTAGTTAAAAACAAGTCCCCACCAGAAGCAGCATATACACCATCACATGATTCTTCCAAATCTGATAACTTACTTCTTCTCAAATGGGTTCAACATTTGGAAGCACAAGAAGACGGTGTAGTATCTGCTGCATCACAAATAACTGAAGATGTTTACATTGACATAAAAGAGGAGTCTGATGATGCCGAGCCCACCTATGAGGAACTTGAGCCTCTGCATCAACACCTCTCTGAGTCTGATAATATAGCTGTAAGATCTACACGCCAAACAGAAAGAAAAGCTAAAAGAGTCAGAGCCGCAGAGAAGTCTGCCACACCCATGGTTTCTTTTAAGTCCGGCTCCACCAGCAGGAAAAAGCGTGTTCCTACACAAGAAGTAGACTATTCTGATCCACTTCGTTACCTAAGAGCAACGACTAGCACGTCAAAGCTTCTCACTCCATCAGAAGAAATTGAGTTGTCCGAAGGAATACAGGACCTACTAAAGCTTGAAAAACTCCAGGAGGATCTCACAGAAAGATGTGGTAGTCAGCCCACATTTGCTCAATGGGCTGCAGTGGCAGGGGTAGATCAGAAGACCCTAAGGAAGCGTTTAAATTATGGCATGTTTTGCAAAGACAAAATGATTAAAAGCAATATACGGCTTGTCATATCAATTGCAAAGGGTTATCAGGGTGCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGTCGAGGCCTGGTAAGAGGTGCAGAAAAGTTTGATGCTTCCAAGGGTTTCAAGTTCTCCACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGCAAATCACTTTCTGATCAGTCAAGGACTATCCGCTTGCCGTTTCACATGGTGGAGGCAACTTACAGAGTGAAAGAGGCTAGAAAACAATTGTATAGTGAAAATGGAAGGCAGCCTGATGACGAAGAAGTTGCTGAGGCAACTGGACTGTCAATGAAGAGGCTTAATGCTGTACTTTTAACCCCAAAAGCTCCTAGATCTCTGGAACAGAAGATTGGGATCGACCAGAATCTTAAACCTTCAGAAGTAATCGCTGATCCTGAAGCGGTAACAGCTGAAGAACAGCTGATCAAGCAATTCATGAAGAAGGATCTCGAGAAGGTACTGGACACTCTGAATCCAAGAGAGAAGCAGGTGATAAGATGGAGATTTGGAATGGATGATGGAAGGATGAAGACCCTGCAAGAGATAGGGGAAAGCATGGGTGTGAGTAGGGAGAGAGTTAGGCAGATTGAGGCATGTGCTTTTAGGAAACTCAAGAACAAGAAGAGAACCAAGCATTTGCAGCAGTATCTTATTTCATAA 1692 0.4279 MSSCLLPDTFTFRYALLPSSSSSSSSSSIKSRDIISCFQPQCVLSTTPSPTSLTLEKLALSSSTTHSHPSPYLPSSTQANFKATLSTESLLTSEENVIAAAASEAVALAKAALKVAKVAALLVKNKSPPEAAYTPSHDSSKSDNLLLLKWVQHLEAQEDGVVSAASQITEDVYIDIKEESDDAEPTYEELEPLHQHLSESDNIAVRSTRQTERKAKRVRAAEKSATPMVSFKSGSTSRKKRVPTQEVDYSDPLRYLRATTSTSKLLTPSEEIELSEGIQDLLKLEKLQEDLTERCGSQPTFAQWAAVAGVDQKTLRKRLNYGMFCKDKMIKSNIRLVISIAKGYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLLTPKAPRSLEQKIGIDQNLKPSEVIADPEAVTAEEQLIKQFMKKDLEKVLDTLNPREKQVIRWRFGMDDGRMKTLQEIGESMGVSRERVRQIEACAFRKLKNKKRTKHLQQYLIS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0004 563 Gene3D - 402 478 IPR036388 -
Lal4g0004 563 MobiDBLite consensus disorder prediction 204 244 - -
Lal4g0004 563 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 327 551 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 250 399 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 ProSitePatterns Sigma-70 factors family signature 2. 522 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 PIRSF Sigma_factor_SigC 1 563 IPR016262 -
Lal4g0004 563 Gene3D - 483 563 IPR036388 -
Lal4g0004 563 Gene3D RNA Polymerase Primary Sigma Factor 87 401 - -
Lal4g0004 563 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 461 560 IPR013324 -
Lal4g0004 563 Pfam Sigma-70 factor, region 1.2 251 283 IPR009042 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987
Lal4g0004 563 Pfam Sigma-70 region 2 329 398 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 36 562 - -
Lal4g0004 563 Pfam Sigma-70 region 3 408 484 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 402 475 IPR013324 -
Lal4g0004 563 MobiDBLite consensus disorder prediction 206 221 - -
Lal4g0004 563 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 36 562 - -
Lal4g0004 563 Pfam Sigma-70, region 4 497 549 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 PRINTS Major sigma-70 factor signature 353 366 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 PRINTS Major sigma-70 factor signature 377 385 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 PRINTS Major sigma-70 factor signature 501 513 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 PRINTS Major sigma-70 factor signature 522 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 PRINTS Major sigma-70 factor signature 537 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lal4g0004 563 CDD Sigma70_r4 491 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0004 Lal-Chr4 60691 64708 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0004 - - aprc:113864822 750.355