Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1408 ATGACAGAAGAAGTGGCAACAGGTTCAACAGAAGAAGTGGCAAATTCTCAAGGGGTAGCAGATACCCATATGGCATTAGAAGCAGTTTCTTCTGCATTCATTGCAACAGGCCAGACCATGATATCTAATGAAGGAGAAGAAGTATCTGAAAACCTAGCCGCCGAAAGCGATTATTTGTCGAGTGAACCCAAAATCGCTTTCGCACGCTTATCTCATCTTCGTTATCTCTGCAATCGTTCTTTCGCAATGGCAGGGAATCAAGTCAAAACCAAAAATCCTTCACAAAAGCAAAAATCTGGCGGTGGTGGTGGTGGTAAGAAGAAGGAAGTGAAGAAAGAGACTGGTTTAGGACTTACGAATAAGAAGGCTGAAAACTTTGGAGAGTGGTATTCTGAGGTAGTGGTTAATTCTGAAATGATTGAGTATTATGATATTTCTGGATGCTATATTCTGAGGCCTTGGGCGATGTCAATATGGGAGAGCATGCAAGCATTTTTTGATCCAGAAATTAAGAAACTGAAAATTAAGAACTGTTATTTCCCTTTGTTTGTGTCTCCTGGAGTTTTGGAAAAGGAGAAGGAACACGTTGAGGGATTTGCTCCAGAGGTTGCTTGGGTGACAAAGTCTGGGAAAACCGATTTAGATGTTCCAATCGCCATTCGTCCAACTAGTGAAACTGTCATGTATCCCTACTTCTCTAAGTGGATAAGGGGACATCGTGACTTGCCATTGAAACTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAATCCCACACCATTCATCAGGAGTCGTGAGTTTCTTTGGCAAGAAGGACACACTGCTTTTGCAACAAAGGAGGAAGCTGATAAAGAGGTTCTTGATATTTTGGAGTTATATAGGCGAATTTATGAAGAGTATTTAGCGATTCCTGTCATAAAGGGTAAGAAAAGTGAACTTGAGAAGTTTGCTGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGCTTAGGCCAAAATTTTTCTAAAATGTTTGATATAGAGTTTGAAGATGAGAATCGAGAGAAGGCAAAGGTCTGGCAGAACTCATGGGCCTATAGCACACGAACTATTGGGGTGATGGTGATGGTTCATGGCGATGACAAGGGATTGGTGCTGCCTCCTAAAGTAGCATCGATCCAAGTCATTGTGATTCCCGTGCCTTACAAAGATGCTGATACACAAGGGATTTTGGATGCCTGTTCTGCTACTGTTAATACATTAGTTGAAGCAGGTATTCGTGCAGAGTCAGATTTAAGAGATAACTATTCTCCTGGTTGGAAGTATTCACACTGGGAAATGAAAGGTGTTCCCCTAAGGATTGAAATTGGGCCAAAGGATTTAGCAAATCAGCAGGTCCGTGCTGTTCGACGTGATAACGGAGCAAAGATAGACATTAAAAGTGTTGATTCGGTCGAGGAAATAAAAAAGTTGCTTGGTAATATTCAACAAAACCTGCTTGAAGTTGCAAAACAAAAACGTGATGAATGCATCCAGGTCATACATACTTGGGATGAGTTTGTTCAAGCTTTGGGCCAAAAAAAAATGATATTAGCTCCTTGGTGTGATGAGGAGGAGGTGGAGGTAGATGTGAAAGCAAGAACAAAGGGTGAGACCGGAGCAGCTAAGACTCTTTGTAGCCCCTTTGAACAGCCAGAACTCCCCGAAGGTACCAAGTGCTTTGCGTCAGGAAAGCCTGCAAAGAAGTGGTCATACTGGGGCAGAAGTTACTAG 1800 0.4228 MTEEVATGSTEEVANSQGVADTHMALEAVSSAFIATGQTMISNEGEEVSENLAAESDYLSSEPKIAFARLSHLRYLCNRSFAMAGNQVKTKNPSQKQKSGGGGGGKKKEVKKETGLGLTNKKAENFGEWYSEVVVNSEMIEYYDISGCYILRPWAMSIWESMQAFFDPEIKKLKIKNCYFPLFVSPGVLEKEKEHVEGFAPEVAWVTKSGKTDLDVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADKEVLDILELYRRIYEEYLAIPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFSKMFDIEFEDENREKAKVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASIQVIVIPVPYKDADTQGILDACSATVNTLVEAGIRAESDLRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANQQVRAVRRDNGAKIDIKSVDSVEEIKKLLGNIQQNLLEVAKQKRDECIQVIHTWDEFVQALGQKKMILAPWCDEEEVEVDVKARTKGETGAAKTLCSPFEQPELPEGTKCFASGKPAKKWSYWGRSY 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1408 599 Gene3D Bira Bifunctional Protein; Domain 2 119 396 IPR045864 -
Lal3g1408 599 Gene3D - 520 599 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 218 384 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lal3g1408 599 CDD ProRS_core_arch_euk 125 386 IPR033721 -
Lal3g1408 599 Hamap Proline--tRNA ligase [proS]. 119 599 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 Pfam Prolyl-tRNA synthetase, C-terminal 526 599 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 TIGRFAM proS_fam_I: proline--tRNA ligase 120 599 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 MobiDBLite consensus disorder prediction 87 113 - -
Lal3g1408 599 Gene3D - 397 517 IPR036621 -
Lal3g1408 599 SUPERFAMILY C-terminal domain of ProRS 522 599 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 SMART ProRS_C_1_2 526 599 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 PANTHER PROLYL-TRNA SYNTHETASE 89 599 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 CDD ProRS_anticodon_zinc 392 599 - -
Lal3g1408 599 SUPERFAMILY Class II aaRS and biotin synthetases 124 390 IPR045864 -
Lal3g1408 599 Pfam Anticodon binding domain 403 499 IPR004154 -
Lal3g1408 599 PRINTS Prolyl-tRNA synthetase signature 177 195 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 PRINTS Prolyl-tRNA synthetase signature 218 229 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 PRINTS Prolyl-tRNA synthetase signature 248 256 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 PRINTS Prolyl-tRNA synthetase signature 258 269 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lal3g1408 599 PANTHER BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE 89 599 - -
Lal3g1408 599 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 158 396 IPR006195 -
Lal3g1408 599 SUPERFAMILY Class II aaRS ABD-related 391 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1408 Lal-Chr3 19990619 20000770 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1408 K01881 - gmx:100782067 935.25