Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1403 ATGATATGGTTGATAGTTTGCTTGCACATTTTTGACATTACCATAAAACGTCTTAAAGAGAACGACTTGATCACTGACCATGCCAACCTTAGCTCTTGTGTGGCCTTGATTCGTGTCAACTTTCGTGCCACGGCTCTTCCTTGGCGCATCAGGCGTGTTGGAGCTTGGCGCATTAGACGCCTTGGCAATGCCAACCTTAGCTCCTATGTGGCCTTGACTCGTGTCAACTTTCGTGCCACGACCCTTCCTTGGCACATCAGGCGTGTTGGAGCTTGGCGCATTAGACGCCTTGGCCGTTCCAACCTTAGCTCATGTGTGGCCTTGACTCGTGTCAACTTTCGTGCCACGGCCCTTCCTTGGCACATCAGGGGTGTTGGAGCTTGGCGCATTAGACGCCTTGGCCTTTCGCGCATTTGGTTGGAGGGTAAGGTAGCTCTAATCACAGGGGCAGCAAGTGGAATTGGAGAAGAGACAGTGAGAATATTTTCTGAAAATGGAGCACTTGTTGTTGCAGCAGATATTCAAGATGAACTTGGTGAAAAAGTTGCAGCATCAATAGGCTCAGACAAAGTGACTTACAAACATTGTGATGTAAGAGATGAAAAACAAGTTGAGGAAACAATCAAGTTCACTTTAGAGAAACATGGTCATATAGATATCTTGTTTAGTAATGCTGGAATTCTAGGCTCCTTATCTAGCATCTTAGATCTTGATCTCAATGAATTTGACAACACTATGGCTACAAATGTTCGCGGCGCGGCCACAACGATTAAGCATGCAGCTAGAGCCATGGTTGAGAAAAAAATCAAAGGGTCTATTATATGCACAACTAGTGTATCAGCCTGCATTGGTGGAACTGGTCCTCATGGTTATACTACATCAAAACATGCACTTCTTGGACTAGTAAGATCAGCATGTAGTGAACTTGGTGCATATGGGATTAGAGTTAATAGTATTTCACCTTATGGAGTTGCTACACCACTTGCATGTAGAGCTTTTAATCTTGAACCTCATGAAGTTGAAGCTAATAGTTGTGCTGAGGCTAATCTAAAAGGTGTTGTTTTGAAGGCTAAGCATATTGCAGAAGCAGCTTTGTTTCTTGCTTCTGATGCAGCAATTTACATTAGTGGTCATAACTTGGTGGTTGATGGTGGATTCTCTTTGGTTAATAGGAGTACTAATTGTTTTGCACCTGTTTACACACAGAATCAATATTAG 1218 0.4343 MIWLIVCLHIFDITIKRLKENDLITDHANLSSCVALIRVNFRATALPWRIRRVGAWRIRRLGNANLSSYVALTRVNFRATTLPWHIRRVGAWRIRRLGRSNLSSCVALTRVNFRATALPWHIRGVGAWRIRRLGLSRIWLEGKVALITGAASGIGEETVRIFSENGALVVAADIQDELGEKVAASIGSDKVTYKHCDVRDEKQVEETIKFTLEKHGHIDILFSNAGILGSLSSILDLDLNEFDNTMATNVRGAATTIKHAARAMVEKKIKGSIICTTSVSACIGGTGPHGYTTSKHALLGLVRSACSELGAYGIRVNSISPYGVATPLACRAFNLEPHEVEANSCAEANLKGVVLKAKHIAEAALFLASDAAIYISGHNLVVDGGFSLVNRSTNCFAPVYTQNQY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1403 405 PRINTS Glucose/ribitol dehydrogenase family signature 144 161 IPR002347 -
Lal3g1403 405 PRINTS Glucose/ribitol dehydrogenase family signature 216 227 IPR002347 -
Lal3g1403 405 PRINTS Glucose/ribitol dehydrogenase family signature 265 281 IPR002347 -
Lal3g1403 405 PRINTS Glucose/ribitol dehydrogenase family signature 291 310 IPR002347 -
Lal3g1403 405 PRINTS Glucose/ribitol dehydrogenase family signature 312 329 IPR002347 -
Lal3g1403 405 PRINTS Glucose/ribitol dehydrogenase family signature 350 370 IPR002347 -
Lal3g1403 405 Gene3D - 136 393 - -
Lal3g1403 405 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 141 389 IPR036291 -
Lal3g1403 405 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 138 393 - -
Lal3g1403 405 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B 138 393 - -
Lal3g1403 405 Pfam Enoyl-(Acyl carrier protein) reductase 149 387 - -
Lal3g1403 405 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 216 227 IPR002347 -
Lal3g1403 405 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 271 279 IPR002347 -
Lal3g1403 405 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 291 310 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1403 Lal-Chr3 19956526 19959408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1403 140 388 Acyl Lipid Metabolism Gene Families AT3G55290 31.835 8.16e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1403 - - gmx:100811279 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1403 3 19956526 19959408 Lal3g1403 3 19956526 19959408 ECH