Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1396 ATGGCTCCACCAAATGATTCATTGAATTCTAACTTGGAACTATCTTTACAAAACATTTTTGAATTATCTGATGGAAAACTCAGTGTAAGAGGTATCCCATTACTCTCTGAAGTACCTGAAAATGTATCTTTCAGTTCATTTTCCTCTGTGTTTGAATCCTCTGATGCACCACCTTCTCTGCTTCAAAGGGTCCTCTCTTTGTCTCACAAAGGTGGTTTCTTTGGCTTCTCTCATGAGAACCCTTCTGATATGTTAATAAACTCATTGGGTAGATTCACTGAAAGAAACTTTCTTAGTATCTTTAGGTTCAAAACTTGGTGGTCTACACAATGGGTTGGTAATTCTGGTTCAGATTTACAAGTAGATACCCAATGGGTTCTTTTTGATGTTCCTGAAATTAAGTCCTATGTTATTATCATTCCTATCATTGAAGGAAATTTCAGGTCTTCACTTAATCCTGGCTCTGATGGCCATATACATATATTGGCAGAAAGTGGGTCCACCCAAGTGAAAGTATCAGGTTTTGATTCTATTGCTTATATTCATGTTTCTGAGAATCCTTATGATTTGATGAGAGAGGCTTATAGTGCTGTAAGAGTTTATCTCAATACTTTTAGGCTTTTAGAAGAGAAAGCAGTTTCAAATATATTTGACAAGTTTGGTTGGTGCACTTGGAATGCTTTTTATTTAACTGTGAATCCTATTGGTATTTTCCACGGACTTAAGGATTTTGATGAGGCAGGCTTGTGTACAAGGTTTTTGATCATTGATGATGGATGGCAAAGCATTAATTTGGATGGCGATGACCCGAATAACGACTCGAAAAACTTTGTTCTTGGTGGTGTACATATGAATGCAAGGCTTCATAGGTTTGATGAATGTGACAAGTTCAAGAAATACAAAGGTGGTTTACTCTTGAGTCCTAATGTACCTTCTTTTGACCCAAATAATGTTAAGGCATTGATTGATAAGGGGATTGAACTTGAGCATGTGGAGAAAGAACTTGACAATGAGAATGCTAACATTGCTGAGATTGAGTCTAGGATCAAGAAGGTGAAGCAGGAAATTGATGATCTCTATGGTAGTGATGAAAGCATAGAATGTGGTAGCTTTTGTTGCAAGGAAGAGGAGTATGGAATGAAAGCTTACACAAGGGATTTAAGGACTAAGTTCAAAGGTTTGGATGATATTTATGTATGGCATGCACTTTGTGGAGCTTGGGGTGGTGTGAGGCCAGGAACTACACATCTCAATGCCAAAATTGTCCCTTGCATACTCTCACCTACCCTTAATAAAACAATGCAGGATCTTGCTGTGGTTAAGATTGTTAAAGGCAACATTGGACTTGTTCATCCTGATCAAACCTATGACTTTTATGACTCTATGCACTCTCATCTTGCCAAATCTGGTATTACAGGAGTCAAAGTTGATGTCATTCATACTCTTGAATATGTGTGTGAAGGATATGGAGGTAGAGTTCAGCTTGCTAAGGCTTACTATGATGGATTGTCAAAATCAATTATCAAGAATTTTAATGGAACTGGAATCATATCTAGCATGCAGCAATGCAATGACTTTTTCTTTCTAGGAACAAAAGAAATTTCATTGGGAAGAGTTGGTGATGATTTTTGGTTCCAAGATCCCAATGGTGACCCAATGGGAATATTTTGGCTACAAGGTGTTCACATGATTCATTGTTCCTACAACAGCTTGTGGATGGGTCAGATGATTCAGCCTGATTGGGACATGTTCCAATCAGACCATGTTTGTGCCAAATATCATGCAGGGTCTAGAGCCATTTGTGGTGGTCCAGTTTATTTGAGTGACCATGTTGGTTCCCATGACTTTGATCTCATTAAGAAGCTTGTGTTCCCTGATGGTACAGTACCTTGCTGCATAAGTTTCCCCCTTCCAACCAGAGATTGCCTTTTCAATAACCCTCTCTTTGATCAAAAAACTGTTTTCAAAATGTGGAATTTCAATAAGTTTGGTGCAGTTATTGGTGCTTTCAACTGTCAAGGTGCTGGTTGGGACCCAAAGTTGCAAGTAATAAGGGGTTTCTCTGAGTCCTACAAGCCAATATCTGGTTCAGTGCATGTAACTGAGGTTGAATGGGACCAAAAGAAAGAAGCATCATATATGGGAAAGTTTGAAGAATATATAGTGTATCTGAATCAAGCTGAGGAACTTCATTTCATGACTCATAAGTCCGAGCCAATAAAATTTACCATCCAACCCTCAACTTTTGAGCTCTATAGCTTTGTGCCAATCACAAAGGTAAGTGGTGTCAGCATTAAATTTGCACCAATTGGGCTAACAAATATGTTCAACAGTGGAGGGACAATTCAGGAATTGGAATATGTTGAAAGTGGTGTAAAGGTTAAGGTTAAAGGTGGTGGAAACTTCCTTGCTTATTCAAGTGAGTGTCCAAAGAAGGTTCTTTTGAATGGCTTTGAGGTCTCTTTTGAATGGGTAGTTGATGGAAAATTGAATCTCAACCTTCCTTGGATTGAAGAAGCTGGTGGAGTTTCTGATCTAGCCATTTTCTTTTAG 2553 0.3843 MAPPNDSLNSNLELSLQNIFELSDGKLSVRGIPLLSEVPENVSFSSFSSVFESSDAPPSLLQRVLSLSHKGGFFGFSHENPSDMLINSLGRFTERNFLSIFRFKTWWSTQWVGNSGSDLQVDTQWVLFDVPEIKSYVIIIPIIEGNFRSSLNPGSDGHIHILAESGSTQVKVSGFDSIAYIHVSENPYDLMREAYSAVRVYLNTFRLLEEKAVSNIFDKFGWCTWNAFYLTVNPIGIFHGLKDFDEAGLCTRFLIIDDGWQSINLDGDDPNNDSKNFVLGGVHMNARLHRFDECDKFKKYKGGLLLSPNVPSFDPNNVKALIDKGIELEHVEKELDNENANIAEIESRIKKVKQEIDDLYGSDESIECGSFCCKEEEYGMKAYTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKIVPCILSPTLNKTMQDLAVVKIVKGNIGLVHPDQTYDFYDSMHSHLAKSGITGVKVDVIHTLEYVCEGYGGRVQLAKAYYDGLSKSIIKNFNGTGIISSMQQCNDFFFLGTKEISLGRVGDDFWFQDPNGDPMGIFWLQGVHMIHCSYNSLWMGQMIQPDWDMFQSDHVCAKYHAGSRAICGGPVYLSDHVGSHDFDLIKKLVFPDGTVPCCISFPLPTRDCLFNNPLFDQKTVFKMWNFNKFGAVIGAFNCQGAGWDPKLQVIRGFSESYKPISGSVHVTEVEWDQKKEASYMGKFEEYIVYLNQAEELHFMTHKSEPIKFTIQPSTFELYSFVPITKVSGVSIKFAPIGLTNMFNSGGTIQELEYVESGVKVKVKGGGNFLAYSSECPKKVLLNGFEVSFEWVVDGKLNLNLPWIEEAGGVSDLAIFF 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1396 850 Pfam Raffinose synthase or seed imbibition protein Sip1 20 833 IPR008811 -
Lal3g1396 850 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 4-RELATED 1 850 - -
Lal3g1396 850 Coils Coil 328 362 - -
Lal3g1396 850 Gene3D Aldolase class I 218 622 IPR013785 -
Lal3g1396 850 PANTHER - 1 850 IPR008811 -
Lal3g1396 850 SUPERFAMILY (Trans)glycosidases 217 622 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1396 Lal-Chr3 19891592 19895301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g1396 18 850 Glycoside Hydrolase AT4G01970 56.943 0.0 1018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1396 K06611 - gmx:100815922 1318.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1396 3 19891592 19895301 Lal3g1396 3 19891592 19895301 ECH