Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1370 ATGGCTCCGTCGCGCCGGAACATCAATGGACGATCACCACTCGTTAATCCACAACGTCAAATCACTTCTTTCTTCACAAAATCTTCTTCTCCGATTCTCTCTAATTCCATCAACAACCCTAACCCTAACGGTAGCCCCGCCACGCCTTCCCAGCCGCACAAGCCCCTCCTTCTCATCGGCGCGTCTCCCTCACCTTCCTCCGATGTCGTTGGCCGAAGGATTAACGTTTATTGGCCTCTTGATAAGGCATGGTACCAAGGCTCTGTTATGTCGTTTGATAAAATTAGTTCCAAGCATTTGGTTCGTTACGATGATGGCGAAGAGGAAGCATTGGATCTTTCTAAGGAAAAGATCGAGTGGCTTCAACAAAATCAGAATTCATCGGGTAAGAAGAAACTCAAACGCCTGCGCAAGATGGTGATTGATGACGATGAGGTTGAAGAGATTCACAAACATGATGATTGTGATGAAGTTGTTGTTGATGACGGAGACGATTCGAGTGATGAAGATTGGGGAAAGAATGTAGTGGTTGAGGATGATGATGAAGGAGAATGTGAAGAAGAAGAAGATATGGAGTTAGAAGTGGAGGATAATGAAGAAGATGTGGCTAAGAGATCTAAGAGAAAGCTAAGTGAAAAGGACGAGGCGCGAAAGCTGAAGGTGGGTGGAATAGAAAAATTGGAGCCTTCGAAGAAGAAGAAGAAGAAAAGTGCAGGGGAAGTTCAAGTTAGTAACAAGGGAGGTTTTAAGCTCTCAGTATTGGAGCCTAACAATATTACTAAGTTAGAGACTAAAAAGATATCTAATGGCACGGACAATGTTGCTACTGATGATACCTCTGAAAGATTTTCGGCTCGTGAAGCTCACAAATTGCGCTTCCTGAAAGAAGATCGCAGGGATGCCAAGCGAAGGGGCCCAGGAGATGAAAATTATGATTCAAGAACTCTCTACTTGCCTCCCGATTTCATAAGGAGTTTGTCAGATGGTCAGAAACAATGGTGGGATTTCAAGGCAAAGCATATGGATAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAACTTTTTGAGATGGACGCACATGTAGGAGTGAAAGAGCTTGACTTGCAGTATATGAAGGGAGAACAACCTCATTGTGGATTTCCGGAGAAGAATTTCTCTATGAATGTGGAAAAACTGGCTAGGAAGGGCTATCGAGTTCTTGTTGTTGAGCAGACTGAAACACCTGAACAGCTGGAGCTTCGCCGGAAGGAGAAGGGCTCCAAAGACAAGGTTGTGAGACGTGAAATATGTGCAGTAGTTACAAAAGGCACATTAACTGATGGGGAGTTGCTATCTGCAAACCCAGAATCTGCATATATAATGGCACTGACCGAGCACCGTGAAAACCATCCAAATGAAATTTCAGAGCATATTTATGGTGTTTGTATAGTTGACGTTGCCACAAGCAGAGTCATTCTTGGACAGCTTAAGGATGATATGGAGTGCAGTGCCTTGTGCTGTATCTTGTCCGAGATCAGGCCAGTTGAAATTGTCAAACCTGCTAAGCTGCTCAGTGCTGAAACAGAGAGAGTACTGCTGAAGCATACCAGAAATCCTATAGTGAATGAATTAGTTCCAATTGTGGAGTTCTGGGATACTGAAAAAACTGTGGATCAATTGAAGAAAATTTACAGGCGCGCTAACAATGTTAGTGTTGAAAATGATTGGTTAGATTGCCTGCCAAATGTTTTGCAGGAGCTGGTGAAAGCAGGAAATGACAGTAGAAGTGCGCTTTCAGCACTTGGCGGTGCTCTCTACTATCTGAAACAGGCTTTCCTAGATGAGACATTGCTTAGATTTGCGCAGTTTGAGTTACTTCCATGTAGTGGTTTCTGCGATCTTGCTTCAAAACCATATATGATTCTTGATGCACCAGCAATGGAGAATCTTGAGGTTTTTGAAAATAGCCGAGATGGAGGTTCTTCAGGGACACTCTATGCCCAATTAAATCAATGTGTTACTGCATTTGGAAGGAGATTGCTAAAGGCATGGCTTGCAAGACCATTATGTCATGCCGAGTCAATTAAGGAACGCCAAGAAGCTGTAGCAGGTCTAAAGGGAGTAAATCTACCTTATACACTAGAATTTCGAAAAGCATTATCAAAGCTACCTGACATGGAGCGGTTGCTTGCACGCATCTTCTCTACTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATGCATCAAAGAAACAACTGCAAGAATTTATTTCAGCTCTGCGTGGTTGTGAGCTCATGGCAGAAGCATGTTCTTCACTTGGTGTTGTTTTGAATCATGTTGAATCTAGACAACTTCATCATCTGTTAACACCTGGTAAAGGACTTCCTGATGTCTGCATTGATCTAAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCAGGGCGTATAATACCTCATAAAGGAGCTGACATAGAATATGACTCAGCCTGTAATGCAGTCAAAGAGATAGAGTCCAGCTTATTAAAGCATCTCAAGGAGCAAAAGAAAATACTTGGAGACACATCAATCACTTATGTCACTGTTGGTAAGGATGCATATCTGTTGGAAGTACCAGAAAATTCGCGAGGGAATATTCCTCAGGATTATGAGCTACGTTCATCCAAAAAAGGTTTCTTTAGGTATTGGACTCCAGGTATTAAAAAGTTCTTAAGAGAGCTCTCCCAAGCTGAATCTGAAAAGGAATCATTGTTGAGAAGTACATTGCAGAGGTTAATCGGGCGTTTTTGTGAACATCACACTAAGTGGAGGCAGTTGGTGTCTGCAACTGCTGAGCTGGATGTTTTGATAAGTTTAGCTATTGCTTGTGACTACTATGAAGGACCAACATGCAGACCAAGTTTCTTAGGCACATTATCTGCAAAAGAAGCTCCATATCTCTCTGCTAAAAGTTTGGGACACCCGGTCCTCAGGCGTGATTCTTTAGGCAATGGTGATTTTGTACACAATGACATAAACATTGGTGGTCCAGATCATGCAAGCTTTATTCTTCTAACTGGTCCTAACATGGGTGGAAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGATTTTGGCCCAGGTAGGGGCTGATGTCCCAGCAGAAAGTTTCAATTTGTCTCCCGTGGACCGGATATTTGTACGAATGGGTGCCAAAGATAATATCATGGCTGGCCAAAGTACTTTTTTAACTGAGCTTTCGGAAACTGCAACAATGCTGTCATCAGCCACTCGTAATTCATTGGTGGCACTGGATGAGCTTGGGCGTGGGACGTCAACTTCCGATGGGCAAGCCATTGCAGGATCAGTACTAGAGCACCTTGTGCGGAACGTGCAGTGTAGGGGATTATTTTCTACCCATTATCACAGATTAGCTATAGATTATGAGAAAGATCCCAAGGTCTCTCTCTGTCACATGGCATGCCAAGTCGGCGGTGGAAATGCAGGCGTGGAAGAGGTCGCCTTTCTTTACAGGCTGACGCCTGGTGCATGCCCCAAGAGCTATGGTGTTAATGTTGCCCGTTTAGCTGGACTTCCAACTTCTGTGCTTCAAACGGCTGCTGCCAAGTCCAGAGAATTTGAGGCTAGTTATGGCAAATGCAGAAAGGTGTCTTCTGAAGCAAACACTTCCAATCAAAATTGGGTTGATGAGATGACACTTTTCATCCAAAAACTGAACAATGTCACTACAAATTTGAATTGTGAAGAGACCATTTGTGATACATTAATTGAGCTTCAAGATAAAGCAAGGGAGCTCCTACAGCAACTTTAA 3819 0.4313 MAPSRRNINGRSPLVNPQRQITSFFTKSSSPILSNSINNPNPNGSPATPSQPHKPLLLIGASPSPSSDVVGRRINVYWPLDKAWYQGSVMSFDKISSKHLVRYDDGEEEALDLSKEKIEWLQQNQNSSGKKKLKRLRKMVIDDDEVEEIHKHDDCDEVVVDDGDDSSDEDWGKNVVVEDDDEGECEEEEDMELEVEDNEEDVAKRSKRKLSEKDEARKLKVGGIEKLEPSKKKKKKSAGEVQVSNKGGFKLSVLEPNNITKLETKKISNGTDNVATDDTSERFSAREAHKLRFLKEDRRDAKRRGPGDENYDSRTLYLPPDFIRSLSDGQKQWWDFKAKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPESAYIMALTEHRENHPNEISEHIYGVCIVDVATSRVILGQLKDDMECSALCCILSEIRPVEIVKPAKLLSAETERVLLKHTRNPIVNELVPIVEFWDTEKTVDQLKKIYRRANNVSVENDWLDCLPNVLQELVKAGNDSRSALSALGGALYYLKQAFLDETLLRFAQFELLPCSGFCDLASKPYMILDAPAMENLEVFENSRDGGSSGTLYAQLNQCVTAFGRRLLKAWLARPLCHAESIKERQEAVAGLKGVNLPYTLEFRKALSKLPDMERLLARIFSTSEASGRNANKVVLYEDASKKQLQEFISALRGCELMAEACSSLGVVLNHVESRQLHHLLTPGKGLPDVCIDLNHFKDAFDWVEANNSGRIIPHKGADIEYDSACNAVKEIESSLLKHLKEQKKILGDTSITYVTVGKDAYLLEVPENSRGNIPQDYELRSSKKGFFRYWTPGIKKFLRELSQAESEKESLLRSTLQRLIGRFCEHHTKWRQLVSATAELDVLISLAIACDYYEGPTCRPSFLGTLSAKEAPYLSAKSLGHPVLRRDSLGNGDFVHNDINIGGPDHASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFNLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAGSVLEHLVRNVQCRGLFSTHYHRLAIDYEKDPKVSLCHMACQVGGGNAGVEEVAFLYRLTPGACPKSYGVNVARLAGLPTSVLQTAAAKSREFEASYGKCRKVSSEANTSNQNWVDEMTLFIQKLNNVTTNLNCEETICDTLIELQDKARELLQQL 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1370 1272 PIRSF Msh6 4 1257 IPR017261 GO:0006298|GO:0030983
Lal3g1370 1272 Gene3D - 966 1246 IPR027417 -
Lal3g1370 1272 Gene3D DNA repair protein MutS, domain I 285 446 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 232 1240 - -
Lal3g1370 1272 Coils Coil 902 922 - -
Lal3g1370 1272 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 232 1240 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lal3g1370 1272 SUPERFAMILY Tudor/PWWP/MBT 68 109 - -
Lal3g1370 1272 Gene3D MutS, connector domain 451 630 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 Pfam MutS domain I 330 442 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 SUPERFAMILY DNA repair protein MutS, domain III 637 960 IPR036187 -
Lal3g1370 1272 MobiDBLite consensus disorder prediction 178 197 - -
Lal3g1370 1272 SUPERFAMILY DNA repair protein MutS, domain I 315 438 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 SMART DNAend 654 995 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 MobiDBLite consensus disorder prediction 198 215 - -
Lal3g1370 1272 Pfam MutS family domain IV 824 915 IPR007861 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 Gene3D - 800 931 - -
Lal3g1370 1272 Pfam MutS domain II 453 605 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 MobiDBLite consensus disorder prediction 1 20 - -
Lal3g1370 1272 Pfam MutS domain III 640 955 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 MobiDBLite consensus disorder prediction 178 215 - -
Lal3g1370 1272 Gene3D - 634 955 - -
Lal3g1370 1272 Gene3D - 63 119 - -
Lal3g1370 1272 Pfam MutS domain V 1019 1209 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 979 1210 IPR027417 -
Lal3g1370 1272 SUPERFAMILY DNA repair protein MutS, domain II 448 649 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lal3g1370 1272 MobiDBLite consensus disorder prediction 32 62 - -
Lal3g1370 1272 SMART mutATP5 1015 1207 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1370 Lal-Chr3 19512949 19522576 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1370 K08737 - gmx:100811104 1928.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1370 3 19512949 19522576 Lal3g1370 3 19512949 19522576 ECH