Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1345 ATGAAGTTCTGTAAGAAATACCAAGAGTACATGCAAGGCCAAGAGAAGAAGCTTCCTGTAGTTGGATTCAAAAAGCTGAAAAAGATCTTAAAGAAATGCAGAAGAAACTATCAACCCCAACAAGACCTTAATGGATCCCTTCCCATCAAAACATGTCCTGATCATTGTCCAGTGTGTGATGGAACATTTTTTCCTCCCCTTATGAATGAAATGTCAGAGGTAGTTGGTTGCTTTAACAAGCGTGCACAGAAACTGCTGAAACTACATCTTGCTTCTGGTTTCAGAAAGTGCATTTTTTGGTTCAAAGGAATATTAAAAGGGAACCATAATTCTCTAATTCATGAAGGCAAAGATCTGGTTACTTATGCTCTCATAAATTCTATTGCAATTAGAAAAATACTAAAGAAATATGACAAGATTCATTATTCAAAGCAAGGGCAATTATTTAAGTCAAAGGTGCAGAGTATGCACATGGAAATTCTTCAAAGTCCATGGCTTTGTGAACTTATGGCTTTCCACATTAATATAAGGGAAACAAAGGTGAAGTCAAGTAAGGCACCTGCTTTTTTTGATGGCTGCTCTCTCACTTTTAAGGATGGAAAACCTTCACTTACTTGTGACTTCTTTGATTCCATCAAAGTTGATATTGACTTGACTTGTTCTATATGCTTGGAAACAGTGTTTGATCCAGTTTCTCTGACTTGCTGCCATATATTCTGTTATATTTGTGCTTGTTCAGCTGCATCAGTAACCATTGTGGATGGACTTAAGACAGCAAATCCTAAAGAGAAATGTCCTATATGCCGAGAGGGAAGAGTTTATCAAGGTGCAGTTCACTTAGAAGAACTAAATATTCTGTTAGGCAGAAGCTGTCAGGAATACTGGGAACAAAGACGCCAAGCAGAGAGGGTAGAAAGGGTTAAGCAAATAAAGGAACACTGGGAATCACAATGTAGGGCATTTGTGGGTGTTTGA 975 0.3785 MKFCKKYQEYMQGQEKKLPVVGFKKLKKILKKCRRNYQPQQDLNGSLPIKTCPDHCPVCDGTFFPPLMNEMSEVVGCFNKRAQKLLKLHLASGFRKCIFWFKGILKGNHNSLIHEGKDLVTYALINSIAIRKILKKYDKIHYSKQGQLFKSKVQSMHMEILQSPWLCELMAFHINIRETKVKSSKAPAFFDGCSLTFKDGKPSLTCDFFDSIKVDIDLTCSICLETVFDPVSLTCCHIFCYICACSAASVTIVDGLKTANPKEKCPICREGRVYQGAVHLEELNILLGRSCQEYWEQRRQAERVERVKQIKEHWESQCRAFVGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1345 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 322 IPR013083 -
Lal3g1345 324 CDD SPX_BAH1-like 2 147 - -
Lal3g1345 324 SMART ring_2 220 268 IPR001841 -
Lal3g1345 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Lal3g1345 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 - -
Lal3g1345 324 SUPERFAMILY RING/U-box 213 272 - -
Lal3g1345 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Lal3g1345 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Lal3g1345 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1345 Lal-Chr3 19238656 19242408 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1345 K16275 - gmx:100787904 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1345 3 19238656 19242408 Lal3g1345 3 19238656 19242408 ECH