Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g1327 ATGCAGAAAATGGCGTATTCGTTCCCAGAAGAAGTTCTGGAACACGTGTTCTCCTTCATTCACTGCGACAAAGACCGAAGTTCAATCTCCATGGTGTGTAAATCATGGTACGAAATCGAACGGTGGTGTAGGAAAAAAATCTTCATCGGTAACTGCTACGCCGTGAGTCCTACGGTGGTGATTAAACGGTTCCCGGAGGTTAGATCCATAGAGGTGAAAGGGAAACCGCACTTCGCTGATTTCAATTTGGTACCTGAGGGTTGGGGCGGTTATGTTTGTCCTTGGATCGAAGCCATGGCGCGTGGTTACCCTTGGCTTGAAGAAATCAAGCTCAAGAGGATGGTTGTAACGGATGAGAGCTTGGAACTTATTGCGAAATCGTTCAAGAATTTCAAGGCTTTGGTTCTCACTTCGTGTGAGGGTTTTACTAATGTTGGACTTGCTGCCATTGCTGCTAATTGCAGGGGTTTGAGGATGTTGGACTTGCAGGAGAGTGGAGACGAGGACCTCAATGGGAATTGGCTAAGCCATTTTCCTGACTCATACACATCATTAGTTTCACTTAACATCTCTTCCATAGGCAATGAGGTGAGTTTGTCTACCTTAGAGTGCCTGCTTGGTAGGTGTCCCAATCTGCAGACTCTCCGCCTGAATCGCTCGGTGCCCCTTGATAGGATTGCTAACCTACTTCATCGGTGCCCTCAGCTGGTAGAATTAGGCACAGGAATCTACTCAACTGAGATGCGTCCAGAGGTCTTTGCAAACCTGGCAGCAGCATTTTCTGGGTGCAAGCAATTGAAGTGCTTGTCTGGCTTTTGGGATGTGCTCCCAACGTATCTTGCAGCTATTTATCCCATCTGCTCCAGGCTAACATCATTAAATTTGAGTTATGCTGCTCTGCAAAGCTCTGATCTTATCAAGCTTGTCAGTCAATGTCCGAGTTTGACACGGTTATGGGTGCTAGATTACATAGAAGATACTGGCCTTGATGCCCTTGCTGCCTCGTGCAAGGATCTAAATGAGTTGAGAGTGTTTCCATCTGACCCATTTGGGTTAGAACCAAATGTTGCATTAACTGAACGGGGCCTTGTGTCTGTGTCTGAAGGCTGCCCAAAGCTCCAGTCAGTTCTATATTTTTGTCGCCAAATGTCTAATGCAGCCCTACATACAATTGCACGGAACAGGCCTAATATGACCCGTTTTCGCCTATGCATTATTGAGCCTCGAACTCCAGATTATCTTACCCGTCAACCTCTGGATTCTGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCAGCGCCTATCACTTTCTGGTCTACTTACTGATCGTGTTTTCGAGTACATTGGGATTTACGCGAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGATAGTGATTTGGGACTCCATCATGTGCTCTCTGGTTGTGACAATCTTAGGAAGCTGGAGATTAGGGACTGCCCCTTTGGTGACAAGGCCCTTTTGGCTAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTCTGTGAGTTATGGAGCATGCAAGTTACTGGGTCAGAGAATGCCAAGACTTAATGTTGAAGTTATTGATGAAAGAGGACCTCCAGAATCAAGGCCATCCACTTGTCCTGTTGAGAAGCTTTATATATACAGGACCATTGCCGGGCCAAGATCAGACATTCCTGGTTTTGTGTGGACAACGAAAGATGATTCTAAACCAAGGATCGAGTAA 1755 0.4632 MQKMAYSFPEEVLEHVFSFIHCDKDRSSISMVCKSWYEIERWCRKKIFIGNCYAVSPTVVIKRFPEVRSIEVKGKPHFADFNLVPEGWGGYVCPWIEAMARGYPWLEEIKLKRMVVTDESLELIAKSFKNFKALVLTSCEGFTNVGLAAIAANCRGLRMLDLQESGDEDLNGNWLSHFPDSYTSLVSLNISSIGNEVSLSTLECLLGRCPNLQTLRLNRSVPLDRIANLLHRCPQLVELGTGIYSTEMRPEVFANLAAAFSGCKQLKCLSGFWDVLPTYLAAIYPICSRLTSLNLSYAALQSSDLIKLVSQCPSLTRLWVLDYIEDTGLDALAASCKDLNELRVFPSDPFGLEPNVALTERGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRPNMTRFRLCIIEPRTPDYLTRQPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGIYAKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQRMPRLNVEVIDERGPPESRPSTCPVEKLYIYRTIAGPRSDIPGFVWTTKDDSKPRIE 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g1327 584 SUPERFAMILY F-box domain 7 40 IPR036047 GO:0005515
Lal3g1327 584 Gene3D - 1 44 - -
Lal3g1327 584 SMART fbox_2 8 49 IPR001810 GO:0005515
Lal3g1327 584 Pfam F-box 6 46 IPR041567 -
Lal3g1327 584 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 5 576 - -
Lal3g1327 584 SUPERFAMILY RNI-like 70 533 - -
Lal3g1327 584 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 5 576 - -
Lal3g1327 584 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Lal3g1327 584 SMART LRR_CC_2 103 127 IPR006553 -
Lal3g1327 584 SMART LRR_CC_2 430 453 IPR006553 -
Lal3g1327 584 SMART LRR_CC_2 479 503 IPR006553 -
Lal3g1327 584 SMART LRR_CC_2 312 335 IPR006553 -
Lal3g1327 584 SMART LRR_CC_2 370 394 IPR006553 -
Lal3g1327 584 SMART LRR_CC_2 128 153 IPR006553 -
Lal3g1327 584 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g1327 Lal-Chr3 19057842 19063169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g1327 K14485 - gmx:100816241 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1327 3 19057842 19063169 Lal3g1327 3 19057842 19063169 ECH
Lal3g1327 3 19057842 19063169 Lal5g0302 5 2668997 2673145 LSH
Lal3g1327 3 19057842 19063169 Lal18g0441 18 3662716 3665849 LSH