Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0850 ATGGAGATAGACACCATTTCAACAGGTTCATGCTCCAAAGAGCACCAAACCATCTTCCAAGAGTGGTTCAATTATGCAGACGAAGATGGTGATGGCCGGTTTACGGGGAATGATGCCACCAAGTTTTTTGCCATATCCAACTTGTCTCGGCAAGAACTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATATCTTGATTTCAAAGAATTTGTCATTGCAATGCAGCTAATTTCTTTGGCACAATCTGGGTACTTAGTAACGCATGGTCTGCTGAGTAGCGATGTTTTTTTGAAAAATCAAAAACTTCCCACCATGGAGGGTTTGGATGCATCTCTAGCAAAGAAAAGGCGCAAGCAAGGAAAGAAAATTGTGAATGGTAATTCTTATCCATCAGTATCAAAAAACTGGTTTACTTCGAAGTCACCGAAAAGGGTTCCTGCTTCCTCTGTAACATCAGTTATCGATGGTTTGAAGAGACTCTACCTTCAGAAATTGAAACCTTTAGAAGTTACTTACCGCTATAATGACTTTGTATCTCCTTTACTGACAAATAGTGATTTTGATGCGAAACCAATGGTTCTGCTTTTGGGTCAGTACTCAACTGGGAAAACAACATTTATAAAACATATGCTTCAAAGTAGTTATCCAGGTGCTCATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTAGTCATGTCTGGACCCGACGAGAGAAGCATTCCTGGTAATACCGTTGCAGTCCAAGCAGACATGCCATTCGGCGGCCTAACGAATTTCGGCACAGCATTTCTGTCAAAATTTGAGTGTTCACAAATGCCTCACCCTCTACTAGAGCACATTACATTTGTGGACAGTCCTGGAGTTCTCTCTGGAGAAAAGCAACGGACACAAAGAGCATATGATTTTACTGGCGTAACGTCTTGGTTTGCTGCTAAGTCTGACTTAATACTCCTTCTGTTTGATCCTCATAAACTCGATGTCAGTGATGAATTCAAGCGTGTTATATCATCCTTAAAGGGGCATGATGATAAAATTCGAGTAGTTTTGAACAAGGCAGATCAAGTTGATACCCAACAACTGATGAGGGTCTATGGAGCATTAATGTGGTCACTTGGAAAGGTGCTTAATACTCCAGAAGTCTCACGTGTATATATTGGCTCTTTCAACGACAAGCCTGTAAATGATGGTATAAGTGGTCCAATTGGTAATGAACTCTTTGAAAAAGAACAAGAAGACCTCCTTTCAGATCTGAAAGATATACCAAAGAAATCTTGTGATAGAAGAATCAACGAGTTTGTAAAACGAGCTCGAGCAGTAAAGATACATGCTTATATTATCAGCCATCTTAAAAAGCATATGCCTGCTATGATAGGCAAAGCTAAAGTTCAGCAAAAGCTCATTGATAATTTGGAGGGTGAATTTTTAAAGGTACAAAAGGAGTTTCATTTACCTCCTGGTGACTTTCCAAATGTTGATGAGTTCAGAGAGATTTTGAGTGGTTACAACATTGATAAGTTTGTCAAACTGAAACCAAAAATGATACAAGCAGTGGATGACATGCTAGCTCATGACATTCCTAACCTCTTAAAGACATTTAGAAATCCCTATGGTTAA 1626 0.3973 MEIDTISTGSCSKEHQTIFQEWFNYADEDGDGRFTGNDATKFFAISNLSRQELKQVWAIADSKRQGYLDFKEFVIAMQLISLAQSGYLVTHGLLSSDVFLKNQKLPTMEGLDASLAKKRRKQGKKIVNGNSYPSVSKNWFTSKSPKRVPASSVTSVIDGLKRLYLQKLKPLEVTYRYNDFVSPLLTNSDFDAKPMVLLLGQYSTGKTTFIKHMLQSSYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFGGLTNFGTAFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRAYDFTGVTSWFAAKSDLILLLFDPHKLDVSDEFKRVISSLKGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPVNDGISGPIGNELFEKEQEDLLSDLKDIPKKSCDRRINEFVKRARAVKIHAYIISHLKKHMPAMIGKAKVQQKLIDNLEGEFLKVQKEFHLPPGDFPNVDEFREILSGYNIDKFVKLKPKMIQAVDDMLAHDIPNLLKTFRNPYG 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0850 541 CDD EHD 195 439 - -
Lal3g0850 541 Pfam Dynamin family 196 355 IPR045063 -
Lal3g0850 541 Pfam Cytoskeletal-regulatory complex EF hand 28 80 IPR000261 GO:0005515
Lal3g0850 541 Gene3D - 10 106 - -
Lal3g0850 541 ProSiteProfiles EH domain profile. 15 86 IPR000261 GO:0005515
Lal3g0850 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 463 IPR027417 -
Lal3g0850 541 SMART eh_3 8 103 IPR000261 GO:0005515
Lal3g0850 541 Pfam Domain of unknown function (DUF5600) 431 532 IPR040990 -
Lal3g0850 541 Pfam N-terminal EH-domain containing protein 159 191 IPR031692 -
Lal3g0850 541 PANTHER CALCIUM-BINDING EF HAND PROTEIN 19 539 - -
Lal3g0850 541 SUPERFAMILY EF-hand 12 86 IPR011992 -
Lal3g0850 541 Gene3D - 160 532 - -
Lal3g0850 541 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Lal3g0850 541 CDD EH 19 85 IPR000261 GO:0005515
Lal3g0850 541 SMART efh_1 18 46 IPR002048 GO:0005509
Lal3g0850 541 SMART efh_1 52 80 IPR002048 GO:0005509
Lal3g0850 541 PANTHER EH DOMAIN 19 539 - -
Lal3g0850 541 Gene3D - 196 424 IPR027417 -
Lal3g0850 541 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 190 426 IPR030381 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0850 Lal-Chr3 7867299 7873836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0850 1 540 EF-hand Containing Proteins AT3G20290 79.228 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0850 K12483 - qsu:112007166 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0850 3 7867299 7873836 Lal3g0850 3 7867299 7873836 ECH