Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0848 ATGCTTCCTCAGCGAATGAAGAAAGCGATCACTGATAATCCAAAGAAGCTTTCCAATTTGATTGACCTTGTCAACCTTCCATCTACTCTCAGAGATTTCGTTGGTCAATCTCAGATTTCTCGTTTGGGCTGTTTCATGCGCGTTTGGTCCTACATTAAAACCAATAATCTCCAGGATTCAAACAACAAAAATGTTGTGAACTGTGATGAAAAGTTGAGATGTATATTGTTGGGGAAACCTCAGGTTGAGTTAGCAGAACTTCCTGCACTTATCAAGCTGCATTTTCCAAAAGAACCCAAGTGA 303 0.3993 MLPQRMKKAITDNPKKLSNLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQDSNNKNVVNCDEKLRCILLGKPQVELAELPALIKLHFPKEPK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0848 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
Lal3g0848 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 2 99 - -
Lal3g0848 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Lal3g0848 100 PANTHER OS09G0133000 PROTEIN 2 99 - -
Lal3g0848 100 Gene3D SWIB/MDM2 domain 5 100 IPR036885 -
Lal3g0848 100 SMART swib_2 20 100 IPR019835 -
Lal3g0848 100 CDD SWIB-MDM2_like 24 95 - -
Lal3g0848 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0848 Lal-Chr3 7846109 7851895 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal3g0848 SWIB 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0848 - - jre:108994028 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0848 3 7846109 7851895 Lal3g0848 3 7846109 7851895 ECH