Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0839 ATGTCCATCTATATGGTGTTGTCACGCGCCTCCAGGACCGCGTGTCGAAGCTCCACGCTTCTCTTTGCTTCCATGAAATCCAAACCCTTACCCACAACCCTCTCTAATGAATTCCATTCCCTCGTTCACCAACCAGCCAACAAGCTGATTCCAATTCAAGCCAATTGGTTGAATCAACCAATAAATTCATACTCAATTGCAAGATTTCATTTTTTTTCATCTGCCTCAACTGAACCTACTAGTGATGAACCTGCAAAAACAAATGAAGAAGGTAAGGTGGCTGATCAGGCTGAACAAGACAAAGATGCAGATCAAACCAAAGAATCAGATGTAGAGAGCGAATGTAATTTATCCAGGGATGATTTAGTAAAGCTTGTAGCTGAGAAGAGAGAACTTTTGAAGTTGAAGCACAAGGAGATTGAGAAAATGCAGGATAAAGTACTCCGTACTTATGCAGATATGGAGAATATCATGGACAGAAGTAGACGTGAAGCTGAGAATTCAAAAAAATTTGCTATACAGAATTTTGCGAAGAGTTTGCTAGATGTTGCTGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAAGAAAGTTATTCAAAAATTGAATCACCTAACGACTCTGTTGAAGCCGCAAAACTCCTGAAAACACTTTTGGAAGGTGTTGAAATGACTGACAAACAACTTTCAGAGGTACTTAAAAAGTTTGGTGTAGTAAAATTTGATCCTACAAATGAGCCATTTAATCCAAACAGACATAATGCCATCTTCCAAATACCTGATGCTTCCAAGCCTCCAGGCACTGTTGGAGCTGTTCTGAAGGCAGGATACATGCTTCACGAACGTGTTCTTCGTCCAGCAGAAGTTGGTGTAACGCAACAAGTGGATGACAGTAATGCAGCTGAGTGA 906 0.4062 MSIYMVLSRASRTACRSSTLLFASMKSKPLPTTLSNEFHSLVHQPANKLIPIQANWLNQPINSYSIARFHFFSSASTEPTSDEPAKTNEEGKVADQAEQDKDADQTKESDVESECNLSRDDLVKLVAEKRELLKLKHKEIEKMQDKVLRTYADMENIMDRSRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESYSKIESPNDSVEAAKLLKTLLEGVEMTDKQLSEVLKKFGVVKFDPTNEPFNPNRHNAIFQIPDASKPPGTVGAVLKAGYMLHERVLRPAEVGVTQQVDDSNAAE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0839 301 MobiDBLite consensus disorder prediction 76 114 - -
Lal3g0839 301 Coils Coil 126 146 - -
Lal3g0839 301 ProSitePatterns grpE protein signature. 247 290 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal3g0839 301 PANTHER GRPE PROTEIN 5 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal3g0839 301 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 130 236 IPR013805 -
Lal3g0839 301 MobiDBLite consensus disorder prediction 83 114 - -
Lal3g0839 301 Gene3D - 120 235 IPR013805 -
Lal3g0839 301 PRINTS GrpE protein signature 148 164 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal3g0839 301 PRINTS GrpE protein signature 244 259 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal3g0839 301 PRINTS GrpE protein signature 271 290 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal3g0839 301 Pfam GrpE 114 291 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal3g0839 301 CDD GrpE 141 290 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lal3g0839 301 PANTHER GRPE PROTEIN HOMOLOG 5 295 - -
Lal3g0839 301 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 238 292 IPR009012 GO:0006457
Lal3g0839 301 Gene3D Head domain of nucleotide exchange factor GrpE 236 291 IPR009012 GO:0006457
Lal3g0839 301 Hamap Protein GrpE [grpE]. 81 292 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0839 Lal-Chr3 7708630 7712307 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0839 K03687 - gmx:100812682 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0839 3 7708630 7712307 Lal3g0839 3 7708630 7712307 ECH