Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0534 ATGAGTAGAAAAAGACCATATTCTCCTCCACCACCACCACCATCATCATCAACTACCCTTTCCCCTAATTCAACGATTAATCTCCCAACCTTCACTTCCTACCTCGATGTTCCAAACCTCTCTCCAAAAATCAACACCCTCTGCAAAATCATCGCTACTACCTCTTCTCTCTCCGTCGAGAAAACCCTCTCTGAAACCGGCTACCTGGTCTCCCGGGAAGACGTCGAAGAGGTCCTCAAGCTCTCTTACTCCTTCCCTGGTCAAGCTGTCAAGTTCTTCCGGTGGTCCGGTCACCAACTTAATGATAACCATAGCCCTTATTCTTGGAACCTCGTCGTTGATTTATTGGGTAAGAATCGTTTCTTTGATGCAATGTGGGATGCTATTAAGTCTATGCATAAAGAACGGTTGCTTTCATTGGCCACCTTTGCATCTGTGTTTAGTAGTTATGTTAACGCCGGCCGTGTTCGCGATTCGATTGTTACGTTCGAGGTTATGGAGAATTATGGTTGTGTTAGGGATGTTGTTGCTTTGAATTCGTTGTTGAGTGCTATTTGTAGGGATGGTAGGGTTTTTGATGCTTATGAGTATTTGCAAGTTGCGAAGAAGATGATTGTTCGGCCGGATAGTGATACTTACGCGATTTTGATGGAAGGCTGGGAGAGTGAGAAGAATGCTGATAGTGCTAAGGAGACTTTTGCAGAGATGGTGAAAGAGTTAGGTTGGGACCCTGGCAATGTGCCTGCTTATGATTCGTTTTTGTGTACTGTTATTAGAGGAAGTAACGGGTTACATGAAGCGATGAAGTTCTGTGATTCGATGAGGGTTCGGAGGTGTTACCCGGGGATGAGGTTTTTCAAGGTTGCGTTGGATGAGTGTGTTAAGTATCATGATGTACGGATGGCTGAGTTTTTTTGGGAGGAGATTGTGGGGAAGACGGGGTTGCAACCCACCACGCTGATGTATAATTCCATGATTGCTTTGTACTGCTACCACAATGATACGGATGAGGCGATGAAGTTGTTGGATGATATGATTTATAAAGGGGCTTTTCCTGATTTGCTAAGTTATAACTTGTTGTTTCGGTTTTTGATCAAGGGTAGGAAATTGCGTGAGGCTTCGGTGGTGTTCAATGAGATGATAAAGAATGAGTGTGTGCCCGACCAGTCTAACTGTGATGCAGCTGTAAGAGCTTACCTTGATAATGGGGATGCTTTTATGGCGATGAAAGTTTGGAAATGTCTGGTACAGAATTACCACAAGGATTTGGAAGATACTGCGAACTTACTTATTGCAGGGCTTCGTGATGCGAACAGGGTACCAGAAGCAGTTAAGTATGCGGAGGATATGATTAGCAGAAGAATCAAGTTAACCTCTTCCACATTGTCTAAGCTGAGACAAAGCCTTGTCAAGGACAGAAAAGAATTTGTGTATGGAGAACTTTTGAGAAAGTGGAAATCTCGTTAG 1467 0.4383 MSRKRPYSPPPPPPSSSTTLSPNSTINLPTFTSYLDVPNLSPKINTLCKIIATTSSLSVEKTLSETGYLVSREDVEEVLKLSYSFPGQAVKFFRWSGHQLNDNHSPYSWNLVVDLLGKNRFFDAMWDAIKSMHKERLLSLATFASVFSSYVNAGRVRDSIVTFEVMENYGCVRDVVALNSLLSAICRDGRVFDAYEYLQVAKKMIVRPDSDTYAILMEGWESEKNADSAKETFAEMVKELGWDPGNVPAYDSFLCTVIRGSNGLHEAMKFCDSMRVRRCYPGMRFFKVALDECVKYHDVRMAEFFWEEIVGKTGLQPTTLMYNSMIALYCYHNDTDEAMKLLDDMIYKGAFPDLLSYNLLFRFLIKGRKLREASVVFNEMIKNECVPDQSNCDAAVRAYLDNGDAFMAMKVWKCLVQNYHKDLEDTANLLIAGLRDANRVPEAVKYAEDMISRRIKLTSSTLSKLRQSLVKDRKEFVYGELLRKWKSR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0534 488 Gene3D Tetratricopeptide repeat domain 84 245 IPR011990 GO:0005515
Lal3g0534 488 Gene3D Tetratricopeptide repeat domain 246 488 IPR011990 GO:0005515
Lal3g0534 488 Pfam PPR repeat family 317 363 IPR002885 -
Lal3g0534 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Lal3g0534 488 Pfam PPR repeat 176 199 IPR002885 -
Lal3g0534 488 Pfam PPR repeat 142 171 IPR002885 -
Lal3g0534 488 Pfam PPR repeat 107 136 IPR002885 -
Lal3g0534 488 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 20 480 - -
Lal3g0534 488 TIGRFAM PPR: pentatricopeptide repeat domain 321 353 IPR002885 -
Lal3g0534 488 TIGRFAM PPR: pentatricopeptide repeat domain 142 175 IPR002885 -
Lal3g0534 488 TIGRFAM PPR: pentatricopeptide repeat domain 107 136 IPR002885 -
Lal3g0534 488 TIGRFAM PPR: pentatricopeptide repeat domain 356 388 IPR002885 -
Lal3g0534 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Lal3g0534 488 PANTHER - 20 480 - -
Lal3g0534 488 MobiDBLite consensus disorder prediction 1 22 - -
Lal3g0534 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Lal3g0534 488 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0534 Lal-Chr3 3906548 3909153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal3g0534 142 486 Glycosyltransferase AT1G05670 23.796 5.82e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0534 - - aip:107633752 686.026