Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal3g0516 ATGGGGTTCGGTTTGTTAGCTTCCAAAGCCATGAGACCAACCTCAAGGCTTCTCAATTCATCAAACCCTAGGAACCTTTTTCTTCGAACCATAGTCTCCAAACCTGAGCTCAACAAACCCGAACCTTCCGCCGCAACGGAGCCACCGCCGCCAGATCTACCACCCCGCACTCCTGTCGCCGACGCTAGGGTCCATTTCACGAACCCCGATGATGCCATCGAGGTTTTCGTTGATGGTTTTCCCGTTAAGATCCCTAAGGGATTTACCGTTCTTCAGGCTTGTGAGGTCGCCGGCGTCGATATTCCTCGATTCTGTTACCATAGCCGGCTATCTATTGCCGGTAACTGCCGTATGTGCCTCGTCGAGGTTGAGAAATCGCCCAAACCTGTTGCTTCTTGTGCCATGCCTGCTCTTCCTGGGATGAAAATTAAGACAGCCACACCCGTGGCAAAGAAAGCGCGAGAAGGGGTGATGGAATTTTTATTGATGAACCATCCATTGGATTGCCCAATTTGTGATCAGGGTGGGGAATGTGACCTTCAGGATCAGTCGATGGCATTTGGTGCTGATCGTGGTCGTTTCACAGAAATGAAGAGATCTGTGGTGGATAAAAATCTTGGACCTTTGGTCAAGACTGTGATGACTCGGTGCATTCAATGTGTTGCCCGTTTTGTGAAACCTAATCTTCAACATTTGAGAAACATGATATATGCTGCTCTGGTGGAATATCTTTCTTCCAACAGGTGTGTTAGATTTGCATCAGAGGTTGCAGGGGTTCAGGATCTTGGCATTTTAGGTCGTGGCAGTGGAGAGGAGATTGGAACATATGTTGAAAAACTTATGACAAGTGAACTTTCTGGAAATGTGATAGATATCTGTCCTGTAGGAGCACTCACTTCAAAACCTTTTGCATTTAAAGCCCGGAACTGGGAGTTAAAGGGTACAGAAAGCATCGATGTTACTGATGCTGTTGGATCCAATATTCGGATTGATAGCAGAGGACCTGAAGTCATGCGTATTCTTCCTCGTTTAAATGAGGACATAAATGAAGAATGGATTTCAGACAAGACCCGCTTTTGTTATGATGGTTTGAAAAGGCAGAGATTAAATGACCCAATGATTCGTGATCCTGATGGACGTTTCAAGGCTGTGAGCTGGCGTGATGCCCTTGCTGTGGTAGCAGAGGTTGCCCATGGAGTTAAACCAGATGAAATTGTCGGAATATCTGGCAAACTTTCTGATGCTGAGTCTATGATTGCACTAAAAGATTTCATAAATAGGTTGGGGTCAAACAATGTGTGGTGTGAAGGCATTGGCGCAAATACTAATGCTGATTTGAGATCAGGATATATTATGAATACTAGCATTGCTGGTCTTGAGAAAGCAGATGTTTTCCTGTTGGTTGGTACCCAGCCAAGGGTGGAGGCTGCTATGGTTAATGCCAGAATACGGAAGACTGTCAGAGCATCCCATGCCAAGGTTGGGTACATTGGAGCTGATGCTGATTTCAACTATGATCATGAACATCTGGGTACTGGCCCTGAAACACTTCTTGAAATAGCTGAGGGACGCCACCCATTTTCCAAGTTAATCTCAGATGCCAAAAATCCTGTTATCATTGTGGGTGGTGGGATTTTTGAGAGGAAGGACCAGGATGCAATTTTTGCTGCTATTGAAACTATTGCAAAACAAGGGAAGGTTGTCAGATCTGACTGGAATGGCCTTAATGTATTGCTTCTCCATGCTGCCCAGGCTGCTGCACTTGACCTTGGACTTGTGCCCCAATCTGAAAAAAGCCTCGAGTCTGCAAAACTTGTTTATTTGATGGGTGCTGATGATATAGACTTGGACAAGATCCCTGCTGACGCTTTTGTGGTTTATCAAGGTCACCATGGTGACAAGGGTGTTTATCGTGCTAACGTCATTTTGCCCGCAGCAGCATTCAGCGAGAAGGAAGGGACTTATGAAAATACTGAAGGATGCACTCAGCAAACACTGCCTGCAGTTCCAACAGTTGGTGACTCCAGAGATGATTGGAAGATAATCCGGGCTCTATCTGAGGTAGCTGGAGTGCGTCTACCCTATGATACAGTCGGTGCTGTTCATGCCCGAATCAAGACCGTAGCCCCGAACCTTGTACATGTGGATGAAAGAGAACCAGCCACATTGCCTTCCTCACTGAGACCAACCTTCACTAAGAATATTGATACAACTGCTTTCGGGATTACAGTTGAGAATTTCTATATGACTGATGCCATTACAAGGGCATCAAAGATAATGGCACAATGCAGTGCTACACTGTTGAAGAAGTGA 2313 0.4578 MGFGLLASKAMRPTSRLLNSSNPRNLFLRTIVSKPELNKPEPSAATEPPPPDLPPRTPVADARVHFTNPDDAIEVFVDGFPVKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTATPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGADRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCVARFVKPNLQHLRNMIYAALVEYLSSNRCVRFASEVAGVQDLGILGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTESIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRDPDGRFKAVSWRDALAVVAEVAHGVKPDEIVGISGKLSDAESMIALKDFINRLGSNNVWCEGIGANTNADLRSGYIMNTSIAGLEKADVFLLVGTQPRVEAAMVNARIRKTVRASHAKVGYIGADADFNYDHEHLGTGPETLLEIAEGRHPFSKLISDAKNPVIIVGGGIFERKDQDAIFAAIETIAKQGKVVRSDWNGLNVLLLHAAQAAALDLGLVPQSEKSLESAKLVYLMGADDIDLDKIPADAFVVYQGHHGDKGVYRANVILPAAAFSEKEGTYENTEGCTQQTLPAVPTVGDSRDDWKIIRALSEVAGVRLPYDTVGAVHARIKTVAPNLVHVDEREPATLPSSLRPTFTKNIDTTAFGITVENFYMTDAITRASKIMAQCSATLLKK 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal3g0516 770 MobiDBLite consensus disorder prediction 42 57 - -
Lal3g0516 770 Pfam NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 154 191 IPR019574 GO:0016491
Lal3g0516 770 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 102 119 IPR000283 GO:0008137|GO:0016020|GO:0042773
Lal3g0516 770 CDD MopB_Res-Cmplx1_Nad11 316 689 - -
Lal3g0516 770 ProSiteProfiles Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile. 312 368 IPR006963 GO:0016491
Lal3g0516 770 Pfam 2Fe-2S iron-sulfur cluster binding domain 71 147 - -
Lal3g0516 770 SMART NADH_G_4Fe_4S_3_2 154 194 IPR019574 GO:0016491
Lal3g0516 770 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 50 724 - -
Lal3g0516 770 SUPERFAMILY 2Fe-2S ferredoxin-like 73 194 IPR036010 GO:0051536
Lal3g0516 770 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 75 KDA SUBUNIT, MITOCHONDRIAL 50 724 - -
Lal3g0516 770 ProSitePatterns Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 169 181 IPR000283 GO:0008137|GO:0016020|GO:0042773
Lal3g0516 770 SUPERFAMILY 4Fe-4S ferredoxins 247 308 - -
Lal3g0516 770 CDD fer2 73 144 IPR001041 GO:0051536
Lal3g0516 770 Pfam NADH-ubiquinone oxidoreductase subunit G, C-terminal 734 763 IPR015405 GO:0016651|GO:0051536
Lal3g0516 770 MobiDBLite consensus disorder prediction 37 60 - -
Lal3g0516 770 Gene3D - 72 194 - -
Lal3g0516 770 Pfam Molybdopterin oxidoreductase 368 687 IPR006656 GO:0016491
Lal3g0516 770 ProSiteProfiles His(Cys)3-ligated-type [4Fe-4S] domain profile. 149 188 IPR019574 GO:0016491
Lal3g0516 770 SUPERFAMILY Formate dehydrogenase/DMSO reductase, domains 1-3 310 716 - -
Lal3g0516 770 Gene3D - 378 437 - -
Lal3g0516 770 Gene3D - 616 719 - -
Lal3g0516 770 Gene3D Dimethylsulfoxide Reductase, domain 2 438 494 - -
Lal3g0516 770 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 71 149 IPR001041 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal3g0516 Lal-Chr3 3763911 3769532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal3g0516 K03934 - gmx:100802040 1279.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g0516 3 3763911 3769532 Lal5g1204 5 14823027 14828640 LSH