Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1070 ATGTTGACAAAATTTGAGACCAAGAGTAACAGAGTGAAGGGTCTGAGTTTCCATATCAAGAGGCCATGGATCTTAGCGAGTCTTCATAGTGGTGTTATTCAGTTATGGGATTATCGAATGGGTACTCTCATTGATCGATTTGATGAACATGATGGTCCTGTTAGAGGGGTTCATTTTCATAACTCTCAACCTCTTTTTGTTTCTGGAGGGGATGATTACAAGATTAAGGTTTGGAACTACAAGACGCACCGGTGTTTGTTTACTCTTCTAGGACACCTTGATTATATTCGTACGGTGCAATTTCATCATGAAAGCCCATGGATTGTGAGTGCCAGTGACGATCAGACCATTCGCATCTGGAACTGGCAGTCACGTACTTGTATATCTGTTTTAACTGGCCACAATCATTATGTTATGTGTGCCTTGTTCCATCCAAAAGAGGACCTTGTTGTGTCAGCCTCTCTGGATCAGACTGTTCGTGTTTGGGATATTAGTTCTCTCAAGAGGAAGAATGCATCTCCGGCAGATGACGTACTGCGACTGAGTCAGATGAATACAGACCTTTTCGGTGGTGTTGATGCAGTTGTTAAGTATGTCTTGGAAGGTCATGACCGGGGTGTCAATTGGGCTTCTTTCCATCCTACACTGCCTCTCATTGTTTCAGGAGCTGATGACCGACAAGTGAAATTGTGGAGGATGAATGACACAAAGGCGTGGGAAGTGGACACATTGAGAGGGCACATGAATAATGTTTCATGTGTGATGTTCCATGCAAAACAGGATATTATTGTCTCGAATTCTGAAGATAAAAGTATTCGAGTATGGGATGCAACAAAGAGGACTGGAATTCAAACATTCCGCCGAGAGCATGATAGATTTTGGATTCTTGTAGCACATCCTGAATTGAATCTTTTGGCAGCTGGGCATGACAGTGGCATGATTGTTTTTAAGCTGGAGAGAGAAAGGCCTGCCTTCACGGTTAGTGGTGATTCATTGTTCTACACAAAAGATCGATTCTTGCGTTTCTATGAATTTTCAACACAAAGAGAGACACAAGTACTTCCAATTCGTAGACCTGGCTCTTTAAGCCTGAATCAAAGTCCAAGGACACTTTCCTATAGTCCAACTGAGAATGCATTTCTTCTGTGTTCGGATGTAGACGGTGGATCTTATGAGTTGTATATCATATCCAAGGATAGCTATGGTAGGGGTGATGTGCAAGATTCTAAGAAAGGTTCTGGAGGATCAGCAGTATTTGTGGCTCGGAATAGGTTTGCCGTGCTTGACAAGAGCACCAATCAAGTTCTTCTGAAAAATTTGAAGAATGAGATTGTTAAAAAGAGTGTCCTCCCAATAGTCACTGATTCTATATTCTATGCAGGAACAGGCAACTTGCTTTGTAGGTCAGAGGATAGGGTTGCTATATTTGATCTTCAACAAAGGCTTGTTGTTGGTGATCTTCAGACCCCTTTTATCAAATATGTTGTATGGTCTAATGACATGGAAAGTGTTGCTTTACTTAGCAAACATGCCATCATAATTGCTAGCAAGAAACTTGTGCACCAATGTACTCTCCACGAGACAATCCGGGTAAAAAGTGGAGGCTGGGATGACAATGGAGTTTTCATTTACACAACATTAAATCACATCAAATACTGCCTTCCTAATGGAGATAGTGGGATAATAAAAACACTGGATGCAACAATTTATATCACAAAGGTTTCTGGAAACACAATCTTCTGCTTGGATCGGGATGGGAAAAGTAGATCTATAATTATTGATGCAACTGAATATATTTTTAAGCTTGCCCTGTTGAAGAAAAGATATGACCATGTCATGAGCATGATAAAGAATTCACAGCTTTGTGGACAGGCTATGATTGCTTATCTACAGCAGAAGGGCTTTCCTGAGGTTGCTCTTCACTTCGTGAAAGATGAGAGAATCCGTTTCAATTTGGCTTTAGAGAGTGGAAACATTCAAACTGCAGTTGCATCAGCTACAGCAATTGATGAGAAAGATCACTGGTATCGCTTAGGGGTTGAGGCTCTTCGCCAAGGAAATGCTGGTATAGTAGAGTATGCTTACCAGAGGACAAAGAATTTTGAGAGGTTGTCTTTCCTTTATCTAGTAACTGGTAACATGGAGAAACTTTCGAAGATGTTAAAAATTGCTGAAGTCAAGAATGATGTGATGGGCCAGTTTCACAATGCCTTGTACATGGGTGATGTTCGAGAACGTATTAAGATCTTGGAGAATGTAGGCCATTTGCCTCTTGCTTACATCACTGCATCTGTCCATGGGCTACATGATGTTGCTGAACGACTTGCAGCTGAGCTGGGGGATAATGTCCCATCTTTGCCTGCGGGAAAAGTGCCATCGCTCCTGATGCCACCGTCACCTGTGATGTGTGGTAGTGATTGGCCCCTTCTCAGGGTCATGAAAGGCATGTTCGATGGTGTGTTTGACAATACAGGTGCAGGTTCTGCTGATGAAGAATATGAGGCTGCTGATGGTGATTGGGGCGAAGAGCTTGACATAGTTGATGTGGATGGCTTACAAAATGGAGATGTTGCTGAGATTCTGGATGATGGAGAAGTGGCTGAAGAAAACGGTGAAGAGGGTGGATGGGAGATGGAGGATTTAGAGCTGCCCCCGGAAGCTGAGACCCCAAAAGTTTCTATCAGTTCACGTTCTTCAGTTTTTGTGCCTCCAACACCTGGCATTCCGGTGAGCCAGATATGGATTCAAAGGTCATCACTTGCAGCTGATCATGCAGCTGCTGGCAATTTTGATACTGCAATGCGGTTACTTAACCGGCAACTTGGGATAAGAAACTTTGCCCCCTTGAAATCCATGTTTCTTGATCTTAACACTGGCAGTCATTCCTATCTGCTTGCATTTTCGTCTGCTCCAGAAATAACACTTGCAGTTGAAAGAGGATGGACTGAGTCATCTAGTCCAAATGTAAGAGGCTCCCCTACACTTCCGTTCAAATTGTCTCAGCTGGATGAAAAGCTTAAAGCTGGTTACAAGTTTACTACTGCTGGGAAATTCTCTGAGGCTCTTCGGGCATTTGTCAATATTCTTCACACAATTCCATTGACTGTTGTTGAGTCAAGGAGGGAAGTGGATGAAGTGAAGGAATTGATTATCATAGTCAAAGAGTATGTTTTGGGTCTCCAGATTGAGTTGCAGAGGAGGGAAATCAAGGACAACCCTGCACGGCAACAGGAGCTAGCAGCATATTTCACTCACTGCAACCTTCAACTACCACACTTGAGGTTAGCTCTGCTCAATGCAATGGTTGTATGCTTCAAGGAAAAGAACCTCGCCACAGCTTATAACTTCGCCAGGAGGCTACTTGAGACAAACCCTACCATCGAAATTCAAGTAAAGAGAGCGAGGCAAGTGGTGGCGGCTGCAGAAAAGAATATGAATGATGCCACACAGTTGAACTACGATTACCGAAACCCATTTGTGATTTGTGGTGCGACATATGTCCCAATCTATCGAGGACAGAAGGATGTCTCTTGCCCATATTGTACTTCTCGATTTGTGCCAAGCCACGAGGGGCAGCTATGTACTGTGTGTGATCTTGCAGTGGTAGGAGCAGATGCTTCTGGGTTGCTCTGTTCACCTTCCCAGTTACGTTGA 3654 0.4327 MLTKFETKSNRVKGLSFHIKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHESPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDISSLKRKNASPADDVLRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILVAHPELNLLAAGHDSGMIVFKLERERPAFTVSGDSLFYTKDRFLRFYEFSTQRETQVLPIRRPGSLSLNQSPRTLSYSPTENAFLLCSDVDGGSYELYIISKDSYGRGDVQDSKKGSGGSAVFVARNRFAVLDKSTNQVLLKNLKNEIVKKSVLPIVTDSIFYAGTGNLLCRSEDRVAIFDLQQRLVVGDLQTPFIKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGGWDDNGVFIYTTLNHIKYCLPNGDSGIIKTLDATIYITKVSGNTIFCLDRDGKSRSIIIDATEYIFKLALLKKRYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQTAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLVTGNMEKLSKMLKIAEVKNDVMGQFHNALYMGDVRERIKILENVGHLPLAYITASVHGLHDVAERLAAELGDNVPSLPAGKVPSLLMPPSPVMCGSDWPLLRVMKGMFDGVFDNTGAGSADEEYEAADGDWGEELDIVDVDGLQNGDVAEILDDGEVAEENGEEGGWEMEDLELPPEAETPKVSISSRSSVFVPPTPGIPVSQIWIQRSSLAADHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLNTGSHSYLLAFSSAPEITLAVERGWTESSSPNVRGSPTLPFKLSQLDEKLKAGYKFTTAGKFSEALRAFVNILHTIPLTVVESRREVDEVKELIIIVKEYVLGLQIELQRREIKDNPARQQELAAYFTHCNLQLPHLRLALLNAMVVCFKEKNLATAYNFARRLLETNPTIEIQVKRARQVVAAAEKNMNDATQLNYDYRNPFVICGATYVPIYRGQKDVSCPYCTSRFVPSHEGQLCTVCDLAVVGADASGLLCSPSQLR 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1070 1217 Coils Coil 1131 1151 - -
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 82 - -
Lal2g1070 1217 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Lal2g1070 1217 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Lal2g1070 1217 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Lal2g1070 1217 PIRSF Alpha-COP 1 1213 IPR016391 GO:0006886|GO:0006888|GO:0030126
Lal2g1070 1217 SUPERFAMILY WD40 repeat-like 4 315 IPR036322 GO:0005515
Lal2g1070 1217 Pfam Coatomer (COPI) alpha subunit C-terminus 814 1217 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 172 IPR001680 GO:0005515
Lal2g1070 1217 ProSitePatterns Trp-Asp (WD) repeats signature. 150 164 IPR019775 -
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 234 - -
Lal2g1070 1217 Pfam WD domain, G-beta repeat 198 231 IPR001680 GO:0005515
Lal2g1070 1217 Pfam WD domain, G-beta repeat 45 79 IPR001680 GO:0005515
Lal2g1070 1217 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Lal2g1070 1217 Pfam WD domain, G-beta repeat 126 163 IPR001680 GO:0005515
Lal2g1070 1217 Pfam WD domain, G-beta repeat 84 121 IPR001680 GO:0005515
Lal2g1070 1217 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 236 546 IPR011048 -
Lal2g1070 1217 CDD WD40 9 317 - -
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 276 - -
Lal2g1070 1217 Gene3D - 639 811 - -
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 166 - -
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
Lal2g1070 1217 SMART WD40_4 40 79 IPR001680 GO:0005515
Lal2g1070 1217 SMART WD40_4 124 163 IPR001680 GO:0005515
Lal2g1070 1217 SMART WD40_4 279 317 IPR001680 GO:0005515
Lal2g1070 1217 SMART WD40_4 82 121 IPR001680 GO:0005515
Lal2g1070 1217 SMART WD40_4 2 37 IPR001680 GO:0005515
Lal2g1070 1217 SMART WD40_4 237 276 IPR001680 GO:0005515
Lal2g1070 1217 SMART WD40_4 193 232 IPR001680 GO:0005515
Lal2g1070 1217 Pfam Coatomer WD associated region 342 767 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 121 - -
Lal2g1070 1217 PANTHER COATOMER SUBUNIT ALPHA 1 1179 - -
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 88 IPR001680 GO:0005515
Lal2g1070 1217 PANTHER COATOMER 1 1179 - -
Lal2g1070 1217 Gene3D - 1 319 IPR015943 GO:0005515
Lal2g1070 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1070 Lal-Chr2 7437754 7442933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1070 62 319 Miscellaneous Gene Families AT5G08390 24.806 3.71e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1070 K05236 - gmx:100784701 2247.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1070 2 7437754 7442933 Lal2g1070 2 7437754 7442933 ECH