Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0275 ATGGGCTCTGTAGCTGAAACACAAAGAACTTTGTACCCGTATGTAACAGGATCCTCTGTGGTTGCAATCAAATACAAAGATGGGATTCTCATGGCTGCTGATATGGGAGGTTCCTATGGGTCTACACTACGATACAAGAGCATTGAACGCTTGAAGCCTATTGGGAAGCATTCCCTTCTCGGTGCGAGTGGGGAAATAAGTGATTTTCAGGAGATTCTACGCTACCTTGACGAACTTATCCTTTATGACAACATGTGGGATGATGGAAATTCTCTAGGGCCTAAGGAGGTGCACAACTATTTGACTCAAGTGATGTATAACAGGCGGAACAAGTTCAACCCTCTGTGGAACTCCCTCGTGCTTGGTGGTGTGAAGAATGGACAAAAGTACCTTGGCACGGTTAACATGATTGGGATTAATTATGAAGACAATCATGTAGCCACCGGGCTGGGAAACCATCTTGCTAGGCCAATTCTCCGTGACGAGTGGCATGAAAATTTGACTTTTGAAGATGCTGTCAAGTTGCTGGAGAAATGCATGCGTGTGCTTTTGTATCGTGACAGGTCTGCTGTCAACAAGATACAGATATCTAAAATTACTGAAGAAGGTGCTACCTTGTTCCCACCATTCTCATTAAAAACAAACTGGGAGTTCTCTGCTTTCAGGAATCCAACTGCGGGTGCTGAGGGTTCATGTCATACTCAATTTCCTATTATATTTGCACCCTTTGGTTTTAATTCTCATTGTTATTCAACTAAGGCTCCATCTAGATCTTATAGAAGAAGAGTTCGTAATAGGTTATTGAAATCCCGAAAGCCTATTCTGGACCAAGCTCAATTTCAGTTAGCAATTTCCCAAATTCCCCCAAGGTTCACTCCTGAGGAACTCTTCAATGTGCTTACTCTTCAAAATGATCCTCTAGTTTGTTTGGAAGTCTTTCATTGGGCTTCTCAGCAGCCCAGGTTTCGGCACGATGTGTGTACTTATCATGTCACCATAAAGAAGCTTGGTGCTGCAAAAATGTACCAAGAAATGGATGACATTGTTAATCAGGTGCTTGCAGTTCCTTCTGTTGGTTCAGAGGCAATGTACAATACCATCATTTATTATTTCACTGAGGCGCGGAAGCTGACTAGAGCAGTCAATATATTTAAGCACATGAAGAGTAGTAGAAGTTTGAATTGCAAACCTTCTATTAGAACTTATCATATTCTTTTTTCTGCACTTTTAAGTAAGGGTAACAACACCTATATAAACTATGTGTATATGGGGACGATTAGATCTCTGTTCAGGCAAATGGTCAATGATGGGATAGAACCAGATATATTTTCGTTAAATTTGATGATAAAAGGTTATGTGCTTTCCCTTCATGTTAATGATGCATTGAGGATATTCCACCAGATGGGTGGGGTTTATGATTGCAAGCCCAACTCTTTTACCTTTGATTACTTGATTCATGGGTTGTGCGCTCAAGGCAGAACAAATAATGCCAAAGAATTATATCATGAAATGAAGACCAAAGGCTTCATCCCGAGTAGTAAATCTTATAATTCACTTGTCAGTGCTTTGGCACTTGGTGGAGAGGTTGATGAGGCAGTAAATTATCTTTGGGAAATGATTGAAAAGCAAAGGTCGACTGATTTTATCACATATAGGACTGTCCTAGATGAGATATGTAGACGAGGAAGGGTTGAGGAGGCCATGAGGTTATTGCAGGAATTGCAAGAGAAGGACCTTGTAGAAGGGCATGATTACAGAAAGCTTCGTTATGTGCTTGAAGATGACTATGGGAATTCAGTGAGCAGAACTGGTTCAGCTTCTCAGTCAGGATGGAAAACTGGCCTTGCAATGAGGTTTTTATGGACTTGGCTACTCCTCAGTCAGAAGGTGATTCCAAAGCATTGGTTTAGGTTCATGCTTCACGCCAGCCTTTGCCAAAATCTCTTCCACCAACAGTTATCTTCATTCATGGTCATGGATATGCTTACTCAGGACCTTGTCAATGGTAGGACATAG 2016 0.4142 MGSVAETQRTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSIERLKPIGKHSLLGASGEISDFQEILRYLDELILYDNMWDDGNSLGPKEVHNYLTQVMYNRRNKFNPLWNSLVLGGVKNGQKYLGTVNMIGINYEDNHVATGLGNHLARPILRDEWHENLTFEDAVKLLEKCMRVLLYRDRSAVNKIQISKITEEGATLFPPFSLKTNWEFSAFRNPTAGAEGSCHTQFPIIFAPFGFNSHCYSTKAPSRSYRRRVRNRLLKSRKPILDQAQFQLAISQIPPRFTPEELFNVLTLQNDPLVCLEVFHWASQQPRFRHDVCTYHVTIKKLGAAKMYQEMDDIVNQVLAVPSVGSEAMYNTIIYYFTEARKLTRAVNIFKHMKSSRSLNCKPSIRTYHILFSALLSKGNNTYINYVYMGTIRSLFRQMVNDGIEPDIFSLNLMIKGYVLSLHVNDALRIFHQMGGVYDCKPNSFTFDYLIHGLCAQGRTNNAKELYHEMKTKGFIPSSKSYNSLVSALALGGEVDEAVNYLWEMIEKQRSTDFITYRTVLDEICRRGRVEEAMRLLQELQEKDLVEGHDYRKLRYVLEDDYGNSVSRTGSASQSGWKTGLAMRFLWTWLLLSQKVIPKHWFRFMLHASLCQNLFHQQLSSFMVMDMLTQDLVNGRT 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0275 671 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 231 604 - -
Lal2g0275 671 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 12 219 IPR029055 -
Lal2g0275 671 Pfam PPR repeat family 363 409 IPR002885 -
Lal2g0275 671 Pfam PPR repeat family 476 524 IPR002885 -
Lal2g0275 671 ProSitePatterns Proteasome beta-type subunits signature. 21 68 IPR016050 GO:0005839|GO:0051603
Lal2g0275 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Lal2g0275 671 ProSiteProfiles Proteasome beta-type subunit profile. 17 199 IPR023333 -
Lal2g0275 671 Gene3D Tetratricopeptide repeat domain 289 418 IPR011990 GO:0005515
Lal2g0275 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Lal2g0275 671 Pfam PPR repeat 444 468 IPR002885 -
Lal2g0275 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Lal2g0275 671 TIGRFAM PPR: pentatricopeptide repeat domain 363 390 IPR002885 -
Lal2g0275 671 TIGRFAM PPR: pentatricopeptide repeat domain 549 579 IPR002885 -
Lal2g0275 671 TIGRFAM PPR: pentatricopeptide repeat domain 479 512 IPR002885 -
Lal2g0275 671 PANTHER ATPASE EXPRESSION PROTEIN 3 231 604 - -
Lal2g0275 671 CDD proteasome_beta_type_4 16 209 IPR016295 -
Lal2g0275 671 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 14 228 IPR029055 -
Lal2g0275 671 Pfam PPR repeat 547 573 IPR002885 -
Lal2g0275 671 Gene3D Tetratricopeptide repeat domain 419 613 IPR011990 GO:0005515
Lal2g0275 671 Pfam Proteasome subunit 16 198 IPR001353 GO:0005839|GO:0051603
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0275 Lal-Chr2 1604474 1611778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0275 344 579 Glycosyltransferase AT1G05670 30.508 3.30e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0275 - - gmx:102666460 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0275 2 1604474 1611778 Lal2g0275 2 1604474 1611778 ECH