Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0212 ATGCATATTGACTTCATAAAAAACTCAAGTTGTATAAAGAATCTGGTGAGAAATGGCATAAGCTATCGGTGGTTCCGATCAGAAGCTTCAGCCTACGCTGAACTCATCGGAATATATGGTCGTGATGGAGCATTGCAGCAAGGTAAGAAGCTTCACGCCCACTTAATCACCACAGGTTTCCATCGTTTCACCCACATTGCATCCAATCTCATAACCTTGTACGCGTGCTGTGGCCAACTCTCCCATGCACGAAAACTGTTTGACAAAATTCCTCAAACAAATGTTCACCGTTACATTGCCCTTATCGGAACCTGCGCTCGTTGTGGCTTCTATGACCATGCTCTAGCGGTTTTCTCCGAGATGCAAACGACCCAACTGCTGAACACTCATAGCATATTCGTCATTCCAAGCGTTCTCAAAGCTTGTAGCCACGTTGGTGATCGAATTACCGGAGAGAAAATACATGGCTTGGTTTTGAAGTGTTCTTTTCATGTTGATGCTTTTGTGAACAGTGCTTTGATCGTTATGTACTCCAAGTGTGAAAGAGTTGAGGAAGCGTACAAGGTGTTTGATGAAATGCCTGTGAAGGACTTGGTGTCTCTGAATGCTGTTGTTTCTGGATATGCTCAACTGGGTCTTTCGAATGAGGCACTGTCTTTGGTAAGAAGTATGAAGTTGCTTGGTTTGAAGCCAAATATTGTCACTTGGAACACTTTGATATCTGGGTTTGCACAAAAATGTGACCTTGTCATGGTTTCTGAGATTTTCAGGTTGATGGTTGAAGATGGTGTCCAGCCTGATGTGGTGTCATGGACTTCTGTTATATCTGGTTTTGTGCACAACTTTCGTAACGAGGAAGCTTTAAATACGTTTAAGCAAATGTTGGGTCACAGGTTGTGCCCAACTTCGAATACTATCAGCACCCTACTGCCAGCTTGTGCTACTGCAGCAAGAATGAGGCATGGGAAGGAGATTCATGGCTATGCCTTGGTGATTGGGGTGGAGGAAGATATATATGTCAGGAGTGCTCTGGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCGAGGACATTGTTCTATAAGATGCCGGTGAAGAACACAGTTACTTGGAACTCAATCATTTTTGGTTATGCAAATCATGGGTATTGCGAGGAAGCAATTGAGCTCTTCAATCAAATGGAGATAGAAGGGAGGGCTAAGCTTGATCATTTAACTTTCACTGCAGCTCTCACTGCATGCAGCCATGCTGGTGAAATTGAACTTGGGCAAAGGCTGTTTAAGGTTATGCAAGAAAAGTACAGCATTGAGCCACGACTGGAGCATTATGCATGCATGGTGGATCTTTTTGGTCGAGCAGGAAAAATTGATGAAGCGTATTGCATTATCAAGACCATGCCTATTGAACCTGATTTATTTGTATGGGGTGCATTACTCGCCGCTTGTAGAAACCATGGAAACACGGAGCTTGCTGAAGTGGCTGCGAAGCATTTGCTGAAATTAGAGCCTGAGAGTTCTGGGAACCGTCTGCTATTGTCCAGTGTATATGCAGATGCTGGCAAGTGGGTAAAGGTCGAGGGGATCAAGAAAACGATAAAGAAGGGAAGACACAGAAAATTTCAAGGGTTGAGTTGGATAGATAATATATAA 1653 0.435 MHIDFIKNSSCIKNLVRNGISYRWFRSEASAYAELIGIYGRDGALQQGKKLHAHLITTGFHRFTHIASNLITLYACCGQLSHARKLFDKIPQTNVHRYIALIGTCARCGFYDHALAVFSEMQTTQLLNTHSIFVIPSVLKACSHVGDRITGEKIHGLVLKCSFHVDAFVNSALIVMYSKCERVEEAYKVFDEMPVKDLVSLNAVVSGYAQLGLSNEALSLVRSMKLLGLKPNIVTWNTLISGFAQKCDLVMVSEIFRLMVEDGVQPDVVSWTSVISGFVHNFRNEEALNTFKQMLGHRLCPTSNTISTLLPACATAARMRHGKEIHGYALVIGVEEDIYVRSALVDMYAKCGFISEARTLFYKMPVKNTVTWNSIIFGYANHGYCEEAIELFNQMEIEGRAKLDHLTFTAALTACSHAGEIELGQRLFKVMQEKYSIEPRLEHYACMVDLFGRAGKIDEAYCIIKTMPIEPDLFVWGALLAACRNHGNTELAEVAAKHLLKLEPESSGNRLLLSSVYADAGKWVKVEGIKKTIKKGRHRKFQGLSWIDNI 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0212 550 Gene3D Tetratricopeptide repeat domain 398 549 IPR011990 GO:0005515
Lal2g0212 550 SUPERFAMILY TPR-like 324 507 IPR011990 GO:0005515
Lal2g0212 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 43 122 - -
Lal2g0212 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 92 549 - -
Lal2g0212 550 Gene3D Tetratricopeptide repeat domain 326 397 IPR011990 GO:0005515
Lal2g0212 550 Gene3D Tetratricopeptide repeat domain 100 229 IPR011990 GO:0005515
Lal2g0212 550 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Lal2g0212 550 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Lal2g0212 550 TIGRFAM PPR: pentatricopeptide repeat domain 199 233 IPR002885 -
Lal2g0212 550 TIGRFAM PPR: pentatricopeptide repeat domain 370 398 IPR002885 -
Lal2g0212 550 TIGRFAM PPR: pentatricopeptide repeat domain 171 198 IPR002885 -
Lal2g0212 550 Gene3D Tetratricopeptide repeat domain 230 325 IPR011990 GO:0005515
Lal2g0212 550 PANTHER OS03G0271300 PROTEIN 92 549 - -
Lal2g0212 550 PANTHER OS03G0271300 PROTEIN 43 122 - -
Lal2g0212 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Lal2g0212 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Lal2g0212 550 Pfam E motif 486 548 IPR046848 -
Lal2g0212 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Lal2g0212 550 Pfam PPR repeat 69 90 IPR002885 -
Lal2g0212 550 Pfam PPR repeat 234 264 IPR002885 -
Lal2g0212 550 Pfam PPR repeat 444 467 IPR002885 -
Lal2g0212 550 Pfam PPR repeat 171 196 IPR002885 -
Lal2g0212 550 Pfam PPR repeat 199 228 IPR002885 -
Lal2g0212 550 Pfam PPR repeat 98 122 IPR002885 -
Lal2g0212 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Lal2g0212 550 Pfam PPR repeat family 367 416 IPR002885 -
Lal2g0212 550 Pfam PPR repeat family 266 314 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0212 Lal-Chr2 1248862 1250514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0212 48 548 Glycoside Hydrolase AT3G49170 31.354 4.21e-79 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0212 - - gmx:100790576 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0212 2 1248862 1250514 Lal2g0212 2 1248862 1250514 ECH