Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1096 ATGGTTCATCAAAGTCACATTCTCTCTTATACTTCTATCTCACTTGACTCAAATCCATTACTAGTTCATTCCTTTTACAACGTTACATTCTCTTCGTTTTCTTATACTCGTCCAATACGACGTCGTTTCATTAGAACCTCTACTCCTCTTAGAACAACCACCAATCTCAGGCGTCTCACCTCTCGGATCGTTCAACTCACGCGCCGCAAACAGCTTCGTCAGATATTGGAAGAGGTTGAGGATGCAAAGAGAGATTATGGGAAGGTGAACACAATAGTGATGAACGCAGTGATGGAGGCTTGTGTTCGTTGCGGTGACATTGACTTAGCACTTAAGATATTTGATGAGATGAAAAGCCCACACCAGGGTTGTGGTGTCGATACTGTTACCTATGCCACGCTTTTGAAGGGGTTAGGCGAGGCACGAAGAGTCGATGAAGCTTTTCAATTGCTTGAATCTGTGGAAAATGGTATGGCCACAGGAAGTCCAAAGCTGTCAGCTGGATTGATCTTTGGTCTTCTAAATGCCTTAATTGACACTGGAGACCTGCGTCGCGCAAATGGCCTTCTTGCACGTTATGGTTTTGTCCTTCGTGAAGATGGCAATTTTTCAATCTCAGTATACAACTTACTAATGAAGGGGTATATAAACTCAGGCTGCCCGCACACTGCAATAAACATGCTCAATGAAATACTACATGAAGGAATAACGCCCGACAGGCTCACATATAATACACTAATTTCAGCATGCGTCAAGAGTGGAAAGTTGGATACTGCAATGCAATTTTTTGAGGAAATGAAGGGAGAAGCACAGAAATCCATTAATGATGATCTGGTTCCAGATATTGTCACATATACGACATTGCTCAAGGGTTTTGGGCAGGCAAAGGATCTCACTTCAGTTTTGAAAATAGTGCTGGAAATGAAATCGTGTCATGAGTTGTACATTGATAGAACCGCTTACACTGCAATAGTTGATGCTTTACTAAAATGTGGCGCATTTATGGGTGCTCTGTGTATATTTGGAGAAATACTGAAGCTGTCTGGTTGGAGACCAGAATTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCCTTTGCTTTTGGAGGGGATTATGATCTAGTTAAAAATTTGTATAAGCGGATTTGGCCAGATTCTGCAGGAACTATCTTACCAGTTGCCCAAGAAGAAGCTGATCACCTTCTCATGGAAGCAGCACTAAATGCAGGCCAGGTTGATGTTGCTATTAAAACTCTTACCGGGATTATTTCAAGATGGAAGGGTATATCATGGACAAGTCGTGGAGGCTTGGTTGCTATGCGTATCGAAGCCATGTTAGGGTTCTCAAAGTCTGTATTCAGTCCTTACTTGCTTCCTCAGGTTTCACCTTCTGAACCGGTTGAGACTTTCATGATTCCATTTGAAGCAACACAGCCACTACAAGGTACCATAAAGTTGGAGAAAGTGGTTACCCGTTTCATTAATGATGCAGTTGTTCCAGTTGTAGATGAGTGGGGCAGCTGCATCGGGATCTTGCACCGCGAAGACTGCAATCAGGTTGATGGTTCAGTTTCAACAATGATGAGAAGTCCTCCTCCATGTGTTACAATTTCAACATCTATTGGTAATGTAGTTGATTTAATATTGGAGAAAGGGTACCCAATGGTTATCATTGTAAAATACATTGACTCATATGCTACTTCTTACAGAGCAGTTGGAGTTTTTACATTACAACAATTGAATAGCCTTATCACTTCTGTATCTGAATCAAAAGGAATATAA 1788 0.4183 MVHQSHILSYTSISLDSNPLLVHSFYNVTFSSFSYTRPIRRRFIRTSTPLRTTTNLRRLTSRIVQLTRRKQLRQILEEVEDAKRDYGKVNTIVMNAVMEACVRCGDIDLALKIFDEMKSPHQGCGVDTVTYATLLKGLGEARRVDEAFQLLESVENGMATGSPKLSAGLIFGLLNALIDTGDLRRANGLLARYGFVLREDGNFSISVYNLLMKGYINSGCPHTAINMLNEILHEGITPDRLTYNTLISACVKSGKLDTAMQFFEEMKGEAQKSINDDLVPDIVTYTTLLKGFGQAKDLTSVLKIVLEMKSCHELYIDRTAYTAIVDALLKCGAFMGALCIFGEILKLSGWRPELRPKPHLYLSMMRAFAFGGDYDLVKNLYKRIWPDSAGTILPVAQEEADHLLMEAALNAGQVDVAIKTLTGIISRWKGISWTSRGGLVAMRIEAMLGFSKSVFSPYLLPQVSPSEPVETFMIPFEATQPLQGTIKLEKVVTRFINDAVVPVVDEWGSCIGILHREDCNQVDGSVSTMMRSPPPCVTISTSIGNVVDLILEKGYPMVIIVKYIDSYATSYRAVGVFTLQQLNSLITSVSESKGI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1096 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 352 IPR002885 -
Lal25g1096 595 TIGRFAM PPR: pentatricopeptide repeat domain 242 267 IPR002885 -
Lal25g1096 595 TIGRFAM PPR: pentatricopeptide repeat domain 207 239 IPR002885 -
Lal25g1096 595 TIGRFAM PPR: pentatricopeptide repeat domain 94 119 IPR002885 -
Lal25g1096 595 TIGRFAM PPR: pentatricopeptide repeat domain 283 311 IPR002885 -
Lal25g1096 595 TIGRFAM PPR: pentatricopeptide repeat domain 129 153 IPR002885 -
Lal25g1096 595 CDD CBS_pair_SF 501 582 - -
Lal25g1096 595 Pfam Pentatricopeptide repeat domain 275 310 IPR002885 -
Lal25g1096 595 Gene3D Tetratricopeptide repeat domain 173 271 IPR011990 GO:0005515
Lal25g1096 595 Gene3D Tetratricopeptide repeat domain 44 157 IPR011990 GO:0005515
Lal25g1096 595 Gene3D Tetratricopeptide repeat domain 272 447 IPR011990 GO:0005515
Lal25g1096 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 157 IPR002885 -
Lal25g1096 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Lal25g1096 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 311 IPR002885 -
Lal25g1096 595 Pfam PPR repeat family 90 138 IPR002885 -
Lal25g1096 595 SUPERFAMILY CBS-domain pair 470 579 IPR046342 -
Lal25g1096 595 ProSiteProfiles CBS domain profile. 529 592 IPR000644 -
Lal25g1096 595 Pfam PPR repeat 235 267 IPR002885 -
Lal25g1096 595 PANTHER OS09G0431600 PROTEIN 29 592 IPR044781 -
Lal25g1096 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Lal25g1096 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 120 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1096 Lal-Chr25 14266014 14276365 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1096 86 384 Miscellaneous Gene Families AT4G11690 24.917 7.33e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1096 - - gmx:100813146 859.366