LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal25g1066	ATGAAGAAATTCAATTCATTCCCAATCATCAAAACCAATCTTTTATCTCATCATTCAATCACAATCACAACCTTAACCTTATCAAATGAGCAACAACAACAACAACAAACACAAACCTCAAAACAAAGAGTTTCTGAACAAACATGTTTATCATTACTTCATTCTTGCACCACTCTCACTTCACTCACTCAAATCCACTCACTCATTCTCAAATTGGGTCTTCATCAAAACCCTTTAGTTCTAACCAAGTTTGCTTCTACTTCATCAAATTTCAATTCCATACACTATGCTTCCTCATTTATATTCCATTCTCACCATAATGCAGACCCACCATCATTTTATGATGCTTTCCTTTTCAACACTGTTATTAGAGCTTATGCTCAAACCCTTCACTCAAAGTCAATGGCTTTGCATTTTTATAAAACCATGCTTTGTTATGGGGTTTTGCCTAATAAGTTCACTTACCCTTTTGTTCTTAAGGCTTGTGCTGGTATTGGTGGATTGAATTTGGGTAAATCGGTACATGGGTTTGTGGTTAAATTGGGTTTTGAGGATGATCTTCATGTCCAGAACACTATGATTCATATGTATTGTTGTTGTGAGGGAGAGGTTGAGTTTGCGCGGAAGGTGTTCGATGGAAGTCCTAAGTCGGATTCGGTGACATGGAGCGCGATGATTGGTGGTTATGCGCGGTCTGGGCGTTCCACGGAGGCTGTTGGGTTGTTTAGGGAAATGCAGGTTGTGGGAGTTTGTCCTGATGAGATCACCATGGTTTCGGTTTTGTCGGCTTGTACGGATTTGGGTGCGCTTGAGTTGGGGAAGTGGTTGGAATCTTATGTTGACAGGATGAAGATAACGAAGTCGTTGGAGTTGTGTAATGCGCTGATTGACATGTTTGCGAAGTGCGGCGATGTTGACAAAGCTATGAAACTGTTTAGAAGAATGAGCATGCGCACCATTGTTTCGTGGACTTCGGTGATCGATGGTTTGGCGATGCACGGTCGCGGATTAGAAGCTGTCTCCTTGTTTGATGAGATGGTTGAACAAGGGGTGGCCCCTGATGATGTTGCATTCATTGGGGTGCTCTCTGCTTGTAGCCATTCCGGGCTAGTTGATAAGGGACATTATTATTTCAATTCAATGGAGAAGAATTTCGGCATTGTGCCAAAGATAGAACACTACGGATGCATGGTGGATTTGTTGAGTAGAGCTGGACTTGTGAAAGAGGCAGTAGAATTTGTCCAAAATATGCCTATTGAACCAAACCAAATCATATGGAGGAGCATAATTACTGCTTGCCATGCGCGCGGTGAGCTCAAGCTTGGCGAGACCATATCAAAAGAGTTAATCAAAAGTGAGCCGATGCATGAATCTAATTATGTTTTGCTTTCAAACATTTATGCGAAGTTGCTACGATGGGAGAAGAAGACCAAGGTCAGGGAAATGATGGATATGAAAGGGATGAAGAAGGTTCCAGGGAGCACCATGATTGAGCTAAACAATGAAATGTACGAGTTCGTTGCAGGCGATAAGTCGCATGATCAGTACAAAGAAATATACGAAATGGTCGATGAGATGGGAAGGGAGATAAAGAGGGCAGGGTATGTGCCTACAACATCACAGGTATTGCTTGACATTGATGAAGAAGATAAAGAAGATGCTTTGCATAGACACAGTGAAAAACTTGCTATAGCTTTTGCTCTTTTGAACACTAATCCTGGAACACCTATTAGAATTGTGAAGAACTTGCGCGTTTGTGAAGATTGCCATTCTGCTACCAAGTTCATATCTAAAGTTTATAACCGAGAGATCGTGGTGAGGGACCGTAATCGTTTCCACCATTTCAACAATGGTTTGTGCTCCTGCAGAGATTTCTGGTGA	1881	0.4179	MKKFNSFPIIKTNLLSHHSITITTLTLSNEQQQQQQTQTSKQRVSEQTCLSLLHSCTTLTSLTQIHSLILKLGLHQNPLVLTKFASTSSNFNSIHYASSFIFHSHHNADPPSFYDAFLFNTVIRAYAQTLHSKSMALHFYKTMLCYGVLPNKFTYPFVLKACAGIGGLNLGKSVHGFVVKLGFEDDLHVQNTMIHMYCCCEGEVEFARKVFDGSPKSDSVTWSAMIGGYARSGRSTEAVGLFREMQVVGVCPDEITMVSVLSACTDLGALELGKWLESYVDRMKITKSLELCNALIDMFAKCGDVDKAMKLFRRMSMRTIVSWTSVIDGLAMHGRGLEAVSLFDEMVEQGVAPDDVAFIGVLSACSHSGLVDKGHYYFNSMEKNFGIVPKIEHYGCMVDLLSRAGLVKEAVEFVQNMPIEPNQIIWRSIITACHARGELKLGETISKELIKSEPMHESNYVLLSNIYAKLLRWEKKTKVREMMDMKGMKKVPGSTMIELNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALHRHSEKLAIAFALLNTNPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFNNGLCSCRDFW	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal25g1066	626	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	115	150	IPR002885	-
	Lal25g1066	626	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	288	318	IPR002885	-
	Lal25g1066	626	TIGRFAM	PPR: pentatricopeptide repeat domain	321	354	IPR002885	-
	Lal25g1066	626	TIGRFAM	PPR: pentatricopeptide repeat domain	291	316	IPR002885	-
	Lal25g1066	626	TIGRFAM	PPR: pentatricopeptide repeat domain	360	389	IPR002885	-
	Lal25g1066	626	TIGRFAM	PPR: pentatricopeptide repeat domain	220	254	IPR002885	-
	Lal25g1066	626	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	47	612	-	-
	Lal25g1066	626	Pfam	PPR repeat family	218	264	IPR002885	-
	Lal25g1066	626	Pfam	PPR repeat family	319	366	IPR002885	-
	Lal25g1066	626	Pfam	E motif	438	498	IPR046848	-
	Lal25g1066	626	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	319	353	IPR002885	-
	Lal25g1066	626	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	218	252	IPR002885	-
	Lal25g1066	626	Pfam	E+ motif	504	530	IPR046849	-
	Lal25g1066	626	Pfam	DYW family of nucleic acid deaminases	534	626	IPR032867	GO:0008270
	Lal25g1066	626	Gene3D	Tetratricopeptide repeat domain	119	290	IPR011990	GO:0005515
	Lal25g1066	626	Gene3D	Tetratricopeptide repeat domain	292	505	IPR011990	GO:0005515
	Lal25g1066	626	Pfam	PPR repeat	393	417	IPR002885	-
	Lal25g1066	626	Pfam	PPR repeat	292	317	IPR002885	-
	Lal25g1066	626	PANTHER	-	47	612	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal25g1066	Lal-Chr25	13931854	13933734	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal25g1066	119	626	Glycoside Hydrolase	AT3G49170	37.622	7.20e-127	392

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal25g1066	-		-	lang:109350726	1194.49