Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1018 ATGTTCCAAAGAAACCCTTTTTCAGAGCCATGCCAACACCTTTTTGATTACAAGCTCAAGCATGGTTTCAATGCCTACAAATCCATCCAAAACCTTCTTGTAACTTCTCCAATTGGGAAGAAAACTAGCATCAAGAAACCACACACAACACCAATACCCAGATGCAGTATTTGTAATAGTTTTGAAGGGAGGATGTATTTGTGTTTGATCTGTTCTTCATTCTCTTGTTTGGATCATACCCTTTTGCATCCCCAATTAGAAATTGGTCATGCTTTGTTTGTAGACATTGAAAGGGCTGAACTTTATTGTGCTCTATGCCATGATCAATTGTATGACCCTGATTTTGATCAACTTGTCATGTCTAAGTATTCAATACTTCTCATGTCAAAAGGTTCCACTTTGAATGAGAGTATTGGTCAGAGATTGATCAAGAGAAGGAGATTTGAATCATCATTTGATTTGTGTACATCCAAGTATAGAGTTTCCAATTCAATTAGAGATCTGAGGGCTAAATCATGTTATCCTTTGGGTTTGAGAGGGTTGAACAATTTGGGTAGTACATGTTTCATGAATTCTGTGTTGCAAGTATTGCTACATGCACCTCCTTTCAGGGACTATTTCTTGAATGGTGGACACTGTATGGAAGCTTGTCACAAAAAAACAGCAAACACTGATCAACAACTGTGTTTGCTTTGTGATATCAATGCTATTTTTTCAGCTGTGTTTTCGGGTGATCGGAATCCATATAGCCCTGCTCAATTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTATGAGCAGCAGGATGCTCATGAGTTTTTCATTTCGATGTTAGATGCAATACATGAGAAAGAGGGCAAATCAAGGAACGTATGCAGAGGTAATGGTGACTGCCAATGTATAGTTCATAGAGTGTTCTCCGGGCTATTGAGATCAGATGTTACATGTATGGCCTGTGGATTCACCTCAACTACCTATGACCCTTATGTGGATATTTCACTTAACTTGGACTCCAATGTCTCATTAACCGAAAAGGGTAAAAAGCTTTCCAAACAGAATGAGGATGGCAGTAGTATGTCTACGCTTTTCGGTTGTTTGGATTTATTCACTAGGCCAGAGAAGTTGGGGTCAGAGCAGAAACTATACTGCCAGAATTGTCAGGAAAGGCAGGACTCACTGAAGCAAATGTCTATCAGAAAGCTCCCTTTGGTACTTAGTTTGCACGTAAAACGATTTGAGCACTCTTTTGTTAAAAAGATGTCAAGAAAGATAGATCGCTACCTACACTTCCCGTTTTCCTTTGACATGACCCCATATTTGTCCTCCTCAATCCTTAGAGCCAGATATGGAAATAGAATTTTTAATTTTGGGGGCAATGACTCTGATGTCTGTTCTGAGTTCAAGATTTTTGCAGTAGTGACACATTCGGGGACTCTTGAGTCTGGTCACTATGTTACTTTCTTACGTTTAAGGAAGCAGTGGTACAGATGTGATGATGCTTGGATAACTGAGGTTGATGAGTCGGCAGTCAGAGCTTCACAGTGCTACATGATTTTCTATGTGCAAAAAGCTCTGTACAATAAAGCAAACGGAGATCTGAGTCGCCGACCGAATTCCCCTGGAAGAGATGTATTTCTTCCTATTGCTGGATGTTGCTAG 1668 0.4005 MFQRNPFSEPCQHLFDYKLKHGFNAYKSIQNLLVTSPIGKKTSIKKPHTTPIPRCSICNSFEGRMYLCLICSSFSCLDHTLLHPQLEIGHALFVDIERAELYCALCHDQLYDPDFDQLVMSKYSILLMSKGSTLNESIGQRLIKRRRFESSFDLCTSKYRVSNSIRDLRAKSCYPLGLRGLNNLGSTCFMNSVLQVLLHAPPFRDYFLNGGHCMEACHKKTANTDQQLCLLCDINAIFSAVFSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKSRNVCRGNGDCQCIVHRVFSGLLRSDVTCMACGFTSTTYDPYVDISLNLDSNVSLTEKGKKLSKQNEDGSSMSTLFGCLDLFTRPEKLGSEQKLYCQNCQERQDSLKQMSIRKLPLVLSLHVKRFEHSFVKKMSRKIDRYLHFPFSFDMTPYLSSSILRARYGNRIFNFGGNDSDVCSEFKIFAVVTHSGTLESGHYVTFLRLRKQWYRCDDAWITEVDESAVRASQCYMIFYVQKALYNKANGDLSRRPNSPGRDVFLPIAGCC 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1018 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 129 IPR013083 -
Lal25g1018 555 Pfam Ubiquitin carboxyl-terminal hydrolase 180 523 IPR001394 GO:0004843|GO:0016579
Lal25g1018 555 ProSiteProfiles Zinc finger UBP-type profile. 9 129 IPR001607 GO:0008270
Lal25g1018 555 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 551 - -
Lal25g1018 555 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 8 551 - -
Lal25g1018 555 SUPERFAMILY RING/U-box 10 117 - -
Lal25g1018 555 SMART Zf_UBP_1 54 101 IPR001607 GO:0008270
Lal25g1018 555 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 179 526 IPR028889 -
Lal25g1018 555 SUPERFAMILY Cysteine proteinases 175 525 IPR038765 -
Lal25g1018 555 Pfam Zn-finger in ubiquitin-hydrolases and other protein 55 114 IPR001607 GO:0008270
Lal25g1018 555 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 180 195 IPR018200 GO:0004843|GO:0006511
Lal25g1018 555 Gene3D Cysteine proteinases 174 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1018 Lal-Chr25 13501907 13506046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g1018 180 523 Miscellaneous Gene Families AT2G24640 30.312 6.31e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1018 K11366 - gmx:100806347 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1018 25 13501907 13506046 Lal25g1018 25 13501907 13506046 ECH