Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0623 ATGGCTACAGATTCTACTAGATCGGTTTCTTCTGAAACAATGGGGGAGAGAATCTGCTTAGCATTGACACCAATCATTGTAGTGGTTGAGGTTCTCATCTTTTCTGTGTTCAATTGTTTCAACTTGTGTCCACGTTTTGTTCACAATCACAAATGTGGCTATACCGCTAAGGATCTTGCGCGTCTTTCTCAGGAAACTAGATTTACTGTAAATGAAGTTGAGGCATTGTATGTACTGTTTAAGAGGTTGAGTAGCTCCATAATTGATGATGGTTCGATTCACAAGGTGGAGCTTAAATTGGCACTATTCCAAACCCCAAATGGAGAAAATCTTTTCCTGGATCGAGTTTTTGATATTTTTGATGAAAAGAGAAATGGTGTTATCGAGTTTGATGAATTTGTCCATGCGCTCAGTGTTTTCCATCCTTATGCCCCTATAGATGAAAAAACTGATTTTGCATTTAAGCTATATGATCTGAGGCAAACTGGGTTTATCGAGCGCGAGGAAGTCAAGCAAATGGTTATAGCCATTTTGACGGAATCCGACATGAATCTTTCAGACGATCTTCTGGAAGCTATTGTTGATAAGACAATTTCTGATGCAGACAAGGACAATGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGAGTAAAAATCCATCCCTCTTGAAGAACATGACACTTCCTTATTTGAAGGATATCTCCATTGCCTTTCCTAGTTTTCTTTTCAAATCAGAGGCTGAAATGTGA 756 0.3836 MATDSTRSVSSETMGERICLALTPIIVVVEVLIFSVFNCFNLCPRFVHNHKCGYTAKDLARLSQETRFTVNEVEALYVLFKRLSSSIIDDGSIHKVELKLALFQTPNGENLFLDRVFDIFDEKRNGVIEFDEFVHALSVFHPYAPIDEKTDFAFKLYDLRQTGFIEREEVKQMVIAILTESDMNLSDDLLEAIVDKTISDADKDNDGKISKEDWKAFVSKNPSLLKNMTLPYLKDISIAFPSFLFKSEAEM 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0623 251 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Lal25g0623 251 PANTHER CALCINEURIN B 3 250 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lal25g0623 251 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Lal25g0623 251 CDD EFh 149 219 IPR002048 GO:0005509
Lal25g0623 251 SMART efh_1 193 221 IPR002048 GO:0005509
Lal25g0623 251 SMART efh_1 149 177 IPR002048 GO:0005509
Lal25g0623 251 SMART efh_1 112 140 IPR002048 GO:0005509
Lal25g0623 251 Pfam EF-hand domain pair 148 217 IPR002048 GO:0005509
Lal25g0623 251 ProSiteProfiles EF-hand calcium-binding domain profile. 189 224 IPR002048 GO:0005509
Lal25g0623 251 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Lal25g0623 251 Gene3D - 58 251 - -
Lal25g0623 251 PANTHER CALCINEURIN B-LIKE PROTEIN 10 3 250 - -
Lal25g0623 251 PRINTS Recoverin family signature 54 68 - -
Lal25g0623 251 PRINTS Recoverin family signature 116 137 - -
Lal25g0623 251 PRINTS Recoverin family signature 163 181 - -
Lal25g0623 251 PRINTS Recoverin family signature 209 229 - -
Lal25g0623 251 SUPERFAMILY EF-hand 59 243 IPR011992 -
Lal25g0623 251 Pfam EF-hand domain pair 115 134 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0623 Lal-Chr25 4745426 4756695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0623 1 199 EF-hand Containing Proteins AT4G33000 65.327 8.23e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0623 K06268 - gmx:100810494 374.015