Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0615 ATGGTGGATCCGTATGTTATCGGTTGGGTTCTATGTTCCGTGCTGAGCCTCTTTGCGCTCTATAGTTTGGTTTTCGCAGGGAATAACCGTCCGAAGAAGGAGGAGGCTCAGTGCTCGGAGAATGTTACAACCGCAGCCGGAGAACGCGGATCCGTGAATCGTAACGGCGACGCTGACGTCATCATTGTTGGAGCTGGTGTTGCTGGCGCTGCTTTGGCTCATACGCTTGGCAAGGATGGGCGGCGAGTACATGTCATCGAAAGAGATCTGACTGAGCCTGACCGAATTGTTGGAGAGTTGCTACAACCTGGTGGCTATCTCAAATTAGTTGAGCTGGGACTTGAAGATTGTGTGGAGCAAATTGATGCTCAGCAAGTGTATGGTTATGCTCTTTTCAAGGATGGGAAACATACACGCCTCTCGTATCCCTTGGAGAAGTTTCATGCAGATGTCTCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGCGTGAGAAAGCTGCCACCCTTCCCAAGTATTGTGTACAGTTGGAGCAGGGGACAGTCACTTCCCTACTTGAAGATGAGGGAATAATTAAAGGTGTGCAATACAAGAACAAAGATGGTGAGCAATTGACAGCATATGCTCCTCTTACCATTGTTTGTGATGGCTGTTTCTCAAACCTGCGTCGTTCTCTATGTAATCCTAAGGTAGATGTTCCCTCTTGTTTTGTTGGCTTAATTTTAGAGAATTGTGAACTTCCATGTGCAAATCATGGCCATGTCATACTGGGAGATCCTTCACCAGTTCTATTCTATCGTATAAGTAGTACAGAGATTCGCTGTCTGGTCGATGTACCTGGTCAGAAGGTTCCTTCTATTTCGAACGGTGACATGGCAAAGTATTTGAAGACAGTGGTCGCTCCACAGATTCCCCCAGAGCTTCGTGAAGCCTTCATAGCGGCAGCGGAAAAAGGCAACATAAGGACAATGCCGAACAGAAGCATGCCAGCAGATCCTCTACCTACTCCAGGAGCCCTTCTGATGGGAGATGCATTCAACATGAGGCACCCTCTAACAGGGGGAGGAATGACTGTGGCATTGTCTGATATTGTCGTGCTAAAAAATCTTCTCAAGCCTTTGCGTGACTTGAATGATGCACCCACACTTTGCAAATACCTTGAATCCTTTTATACCTTGCGTAAGCCGGTGGCATCCACCATAAATACGTTGGCAGGAGCCCTTTACAAGGTTTTCTGTGCATCCCCCGATCAGGCAAGGAATGAAATGCGCCAAGCTTGCTTTGATTATCTGAGCCTTGGGGGCCTATTCTCGCAAGGACCCGTCTCATTACTTTCGGGATTAAACCCTCGTCCCTTGAGCTTGGTTCTTCATTTCTTTGCTGTTGCAGTATATGGCGTTGGCAGATTGCTATTACCATTTCCCTCACCTAAAAGAATATGGATTGGAGCTCGACTACTCTCTAGTGCATCGGGAATCATCTTTCCAATTATTAAGGCCGAAGGGGTTCGTCAGATGTTTTTCCCTGCAACTGTTCCTGCTTATTACAGAACTCCCCCACCTTCATAG 1575 0.4724 MVDPYVIGWVLCSVLSLFALYSLVFAGNNRPKKEEAQCSENVTTAAGERGSVNRNGDADVIIVGAGVAGAALAHTLGKDGRRVHVIERDLTEPDRIVGELLQPGGYLKLVELGLEDCVEQIDAQQVYGYALFKDGKHTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAATLPKYCVQLEQGTVTSLLEDEGIIKGVQYKNKDGEQLTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLILENCELPCANHGHVILGDPSPVLFYRISSTEIRCLVDVPGQKVPSISNGDMAKYLKTVVAPQIPPELREAFIAAAEKGNIRTMPNRSMPADPLPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLKNLLKPLRDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARNEMRQACFDYLSLGGLFSQGPVSLLSGLNPRPLSLVLHFFAVAVYGVGRLLLPFPSPKRIWIGARLLSSASGIIFPIIKAEGVRQMFFPATVPAYYRTPPPS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0615 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 59 81 - -
Lal25g0615 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Lal25g0615 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Lal25g0615 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Lal25g0615 524 PANTHER SQUALENE MONOOXYGENASE 1 522 IPR040125 GO:0004506|GO:0016126
Lal25g0615 524 SUPERFAMILY FAD/NAD(P)-binding domain 58 434 IPR036188 -
Lal25g0615 524 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 522 - -
Lal25g0615 524 Pfam NAD(P)-binding Rossmann-like domain 62 88 - -
Lal25g0615 524 Gene3D - 51 434 IPR036188 -
Lal25g0615 524 Pfam Squalene epoxidase 211 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0615 Lal-Chr25 4667197 4671443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0615 40 522 Miscellaneous Gene Families AT1G58440 79.794 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0615 K00511 - gmx:100804406 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0615 25 4667197 4671443 Lal25g0615 25 4667197 4671443 ECH
Lal8g0696 8 4938198 4942658 Lal25g0615 25 4667197 4671443 LSH