Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0547 ATGGCTGCAATTTCATCATTCTCAGCTTATTTTTCAGTTCGTTCTGATAAACCCTCATTCTCAATTTCACCCTCAATTTTCTCCTCTTCCCTTAATTTCCCTCGCATTTCCGTTTCCCAATTTCCTCTTAAAATTTCATGCAATGCGTCTTCCACTGTTTCCGCTCAATCCACTTCCCCCACTGCAAAAATTGAGCTGAAAGATTTTCTTCACATAAATGATTTTGATAAGGACACCATTTTGAGGATCTTAGATCGAGCCATTGATGTCAAGGCATTAATTAAATCAGGGGACAGATCATTTCAACCATTTAAAGGGAAGACAATGGCAATGATCTTTGCCAAGCCATCCATGAGAACACGTGTTTCATTTGAGACTGGATTTACATTGTTAGGTGGCCATGCTATATATTTAGGACCTGATGATATCCAAATGGGCAAGCGAGAGGAGACTCGTGATGTTGCTCGTGTCTTGTGTCGCTATAATGACCTTCTTATGGCTCGCGTTTTTGCTCATCAGGACATACTTGATCTTGCAAAGTACGCAACTGTTCCAGTTATCAATGGATTGACTGACTACAACCATCCTTGCCAGATAATGGCTGATGCCCTCACTATGATTGAGCACATTGGTCAGTTGGAAGGCACCAAGGTTGTCTATGTTGGAGATGGAAATAATATTGTCCACTCATGGCTGTTGCTGGCATCTATTGTTCCATTTCACTTCGTTTGTGCTTGTCCAAAGGGCTTTGAACCCGATGAGAAAACAGTTGAGAAGGCAAGACAGGCTGGAATCAGCAAGATTGAGATAACTAATGATCCCAAAGAAGCTGTCAGAGGAGCTGACGTTGTCTATTCAGATGTCTGGGCCAGCATGGGGCAAAAGGAAGAGGCTGCATACCGTCGCCAAGTATTTAAAGGATTTCAGGTGGACAAGAGTCTTATGGATATAGCGGGCTCAAAAGCGTTTTTTATGCATTGCTTACCAGCCGAAAGAGGGGTTGAGGTGACTGACGAAGTTATTGAAGCACCAAATTCAATTGTGTTCCAACAAGCTGAGAACCGATTACATGCACAAAATGCCATAATGCTCCATGTGCTCGGAAAGTAA 1110 0.4252 MAAISSFSAYFSVRSDKPSFSISPSIFSSSLNFPRISVSQFPLKISCNASSTVSAQSTSPTAKIELKDFLHINDFDKDTILRILDRAIDVKALIKSGDRSFQPFKGKTMAMIFAKPSMRTRVSFETGFTLLGGHAIYLGPDDIQMGKREETRDVARVLCRYNDLLMARVFAHQDILDLAKYATVPVINGLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGDGNNIVHSWLLLASIVPFHFVCACPKGFEPDEKTVEKARQAGISKIEITNDPKEAVRGADVVYSDVWASMGQKEEAAYRRQVFKGFQVDKSLMDIAGSKAFFMHCLPAERGVEVTDEVIEAPNSIVFQQAENRLHAQNAIMLHVLGK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0547 369 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 113 132 IPR006130 GO:0006520|GO:0016597|GO:0016743
Lal25g0547 369 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 195 206 IPR006130 GO:0006520|GO:0016597|GO:0016743
Lal25g0547 369 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 320 329 IPR006130 GO:0006520|GO:0016597|GO:0016743
Lal25g0547 369 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 332 355 IPR006130 GO:0006520|GO:0016597|GO:0016743
Lal25g0547 369 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 214 365 IPR006131 GO:0006520|GO:0016597|GO:0016743
Lal25g0547 369 Gene3D Aspartate/ornithine carbamoyltransferase 67 197 IPR036901 GO:0006520|GO:0016597|GO:0016743
Lal25g0547 369 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 21 368 - -
Lal25g0547 369 Gene3D Aspartate/ornithine carbamoyltransferase 198 363 IPR036901 GO:0006520|GO:0016597|GO:0016743
Lal25g0547 369 TIGRFAM orni_carb_tr: ornithine carbamoyltransferase 67 367 IPR002292 GO:0016743
Lal25g0547 369 PRINTS Ornithine carbamoyltransferase signature 111 125 IPR002292 GO:0016743
Lal25g0547 369 PRINTS Ornithine carbamoyltransferase signature 144 157 IPR002292 GO:0016743
Lal25g0547 369 PRINTS Ornithine carbamoyltransferase signature 184 198 IPR002292 GO:0016743
Lal25g0547 369 PRINTS Ornithine carbamoyltransferase signature 284 294 IPR002292 GO:0016743
Lal25g0547 369 PRINTS Ornithine carbamoyltransferase signature 346 357 IPR002292 GO:0016743
Lal25g0547 369 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 65 368 IPR036901 GO:0006520|GO:0016597|GO:0016743
Lal25g0547 369 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 67 208 IPR006132 GO:0006520|GO:0016743
Lal25g0547 369 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, CHLOROPLASTIC-LIKE 21 368 - -
Lal25g0547 369 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 66 368 IPR024904 GO:0004585|GO:0006591
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0547 Lal-Chr25 3984011 3987763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0547 K00611 - gmx:100796780 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0547 25 3984011 3987763 Lal25g0547 25 3984011 3987763 ECH