Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0527 ATGTGTCATTTAAAGTCCTACTCTCCCGCTCTTCTTGCTTTCTATTCCCCTTCACTTCTCTCTGACCTAGCGCCACTCACCGTCGTCGCCGCCGCCACCACCACCACCACCACCACCGATTCAACATTCTCCCTCCATCTTCATTTAACCTCCGTTTTCACTAGAAATCATGCAAGCTCCGAGGATTCTTTGAAACGTGAGTCTGGGACTAAGGTGCACCATGCTAACATTCAAGCATCGAAGGCTGTTGCTGACATAATCCGTACAACATTGGGACCCAGGTCCATGCTGAAAATGCTACTCGATGCTTCGGGAGGAATTGTGGTGACTAATGATGGGAATGCTATCTTACGTGAATTAGATATTGCTCACCCAGCTGCGAAGTCTATGATTGAACTAAGTCGAACCCAAGATGAAGAAGTGGGGGACGGAACAACATCTGTCATCATTCTTGCTGGCGAGATGCTCCATGTTGCCGAGGCATTCATTGAGAAAAACTATCATCCTACAGTTATTTGCAGAGCTTATAACAAAGCTCTTGAGGATGCTATTGCTGTTTTAGACAAAATTGCAATGGTCATTGATCCCCATGATAGAACTACAATGCTAGGGCTTGTAAAAAGCTGCATAGGTACCAAGTTCACTAGTCAATTTGGGGATTTAATTGCTGATTTGGCTATCGATGCTACCTCAACAGTGGGTGTTGATATTGGTCAAGGTTTGAGAGATGTAGATATTAAAAATTATATTAAGGTTGAGAAGGTTCCTGGTGGGCAGTTGGAGGACTCAAGAGTTCTTAAGGGTGTTATGTTTAACAAAGACGTGGTTGCCCCTGGCAAAATGAGGAGAAAGATTGTTAACCCTCGTATCATTCTTCTTGATTCTCCTCTTGAGTATAAAAAGGGTGAGAACCAAACAAATGCTGAGCTGCTCAAAGAAGAAGACTGGAATCTCTTATTGAGGATGGAAGAAGAATACATTGAGGAGATTTGCATGCAGATACTGAAGTTTAAACCAGACTTGGTAATCACGGAGAAGGGTCTCAGTGATTTGGCATGCCATTATCTGAGCAAGCACGGAGTTACTGCAATCAGGAGGCTGAGGAAAACTGATAATAACAGAATTGCAAGGGCATGTGGGGCTGTTATCGTGAACAGACCAGACGAATTGCAGGAGTCTGATGTCGGTACTGGTGCTGGGTTATTTGAAGTTAAGAAAATTGGAGATGAGTTCTTTGCATTTGTTGTTGATTGCAAGGACCCTAAGGCTTGTACTGTACTATTAAGGGGTGCAAGTAAGGATCTCTTGAATGAAGTTGAGAGAAACCTACAGGATGCAATGTCTGTTGCAAGGAATATAATTAAAAATCCTAAACTTGTTCCTGGAGGTGGTGCTACAGAGTTGACTGTATCAGCCACTTTGAAACAGAAGAGTTCATCAGTTGAAGGCATAGAGAAATGGCCTTATGAAGCCGCTGCAATTGCTTTTGAGGCTATACCACGAACTTTGGCACAAAATTGTGGAATAAATGTCATCCGGACCATGACTGCACTACAAGGAAAGCATGCAAATGGAGAAAATGCATGGGTTGGCATAGATGGAAATACTGGTGCCATCACTGACATGAAAGAGTGCAAGATCTGGGATGCCTACAATGTGAAGGCACAAACATTTAAAACTGCAATTGAAGCTGCTTGCATGCTTTTGAGGATTGATGACATAGTAAGTGGGATCAAGAAGAAGCAGGCCCCCGGAGCAGGCCCTTCAAAGTCTAAGATTGAGACTGAAGCAGATGCTGACAATTGTACTACGGAAGATCCTCTGAATACTAACCAGTTCAGAAAAATC 1848 0.4329 MCHLKSYSPALLAFYSPSLLSDLAPLTVVAAATTTTTTTDSTFSLHLHLTSVFTRNHASSEDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDIAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLHVAEAFIEKNYHPTVICRAYNKALEDAIAVLDKIAMVIDPHDRTTMLGLVKSCIGTKFTSQFGDLIADLAIDATSTVGVDIGQGLRDVDIKNYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELLKEEDWNLLLRMEEEYIEEICMQILKFKPDLVITEKGLSDLACHYLSKHGVTAIRRLRKTDNNRIARACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFVVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWVGIDGNTGAITDMKECKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGAGPSKSKIETEADADNCTTEDPLNTNQFRKI 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0527 616 PRINTS Tailless complex polypeptide 1 (chaperone) signature 85 101 IPR017998 GO:0140662
Lal25g0527 616 PRINTS Tailless complex polypeptide 1 (chaperone) signature 107 125 IPR017998 GO:0140662
Lal25g0527 616 PRINTS Tailless complex polypeptide 1 (chaperone) signature 137 156 IPR017998 GO:0140662
Lal25g0527 616 PRINTS Tailless complex polypeptide 1 (chaperone) signature 425 447 IPR017998 GO:0140662
Lal25g0527 616 PRINTS Tailless complex polypeptide 1 (chaperone) signature 459 471 IPR017998 GO:0140662
Lal25g0527 616 SUPERFAMILY GroEL-intermediate domain like 194 456 IPR027410 -
Lal25g0527 616 SUPERFAMILY GroEL equatorial domain-like 65 577 IPR027413 -
Lal25g0527 616 Gene3D GroEL 267 421 IPR027409 -
Lal25g0527 616 MobiDBLite consensus disorder prediction 580 616 - -
Lal25g0527 616 SUPERFAMILY GroEL apical domain-like 262 430 IPR027409 -
Lal25g0527 616 PANTHER CHAPERONIN 61 592 IPR017998 GO:0140662
Lal25g0527 616 ProSitePatterns Chaperonins TCP-1 signature 2. 109 125 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lal25g0527 616 TIGRFAM chap_CCT_gamma: T-complex protein 1, gamma subunit 62 581 IPR012719 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lal25g0527 616 Gene3D - 193 457 IPR027410 -
Lal25g0527 616 ProSitePatterns Chaperonins TCP-1 signature 1. 88 100 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lal25g0527 616 CDD TCP1_gamma 62 577 IPR012719 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lal25g0527 616 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT GAMMA 61 592 - -
Lal25g0527 616 MobiDBLite consensus disorder prediction 602 616 - -
Lal25g0527 616 Coils Coil 436 456 - -
Lal25g0527 616 Pfam TCP-1/cpn60 chaperonin family 83 576 IPR002423 GO:0005524
Lal25g0527 616 Gene3D - 80 575 IPR027413 -
Lal25g0527 616 ProSitePatterns Chaperonins TCP-1 signature 3. 137 145 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0527 Lal-Chr25 3780048 3786061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0527 220 466 Acyl Lipid Metabolism Gene Families AT4G33240 27.692 6.72e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0527 K09495 - cit:102606669 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0527 25 3780048 3786061 Lal25g0527 25 3780048 3786061 ECH
Lal8g0530 8 3619274 3624965 Lal25g0527 25 3780048 3786061 LSH