Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0476 ATGGGTGATGCATTTGATGAAGAGTGTGATTACCTCTTCAAGTGTGTTCTTATTGGAGACTCTGGAGTTGGGAAATCAAATCTTCTCTCAAGGTTTTCAAAAGATGAATTTCGTTTGGATTCAAAGCCAACCATAGGTGTGGAAATTGCTTATAGGAAAATCAAGATCAAACATAAACTTATCAAAGCTCAGATATGGGGCACTGCTGGTCAAGAAAGGTTTAGAGCTATCACAAGCTCATACTATAGAGGAGCATTGGGAGCAATGCTAGTGTTTGACATTACAAGGAGAGCAACCTTTGTGAGTTTAAGAAAATGGTTACATGAACTAAGAGAGTTTGGAAATGAAGATTTGGTAGTTATTCTAGTTGGAAGCAAAACTGATTTGGAACAATCAAGAGAAGTTGAAAAAGAAGAAGGAAAAGTATATGCAGAAACAGAAGGGTTATGTTTCATGGAAACCTCAGCTTTTAAGAATCTGAATGTTGAGGAAGCATTCTTAGAAATGATAACCAAGATCCATGACATAACAAGTCAAAAAACTTTGGAAGCTAAAATGAATGGCACAAAATTGAGTGTTGCAAATGGAAAAGAGATTCATATAGGTGATGATGAAGTGACTGCTACCAAACAATCAAATTGCTGTACAAATTGA 654 0.3593 MGDAFDEECDYLFKCVLIGDSGVGKSNLLSRFSKDEFRLDSKPTIGVEIAYRKIKIKHKLIKAQIWGTAGQERFRAITSSYYRGALGAMLVFDITRRATFVSLRKWLHELREFGNEDLVVILVGSKTDLEQSREVEKEEGKVYAETEGLCFMETSAFKNLNVEEAFLEMITKIHDITSQKTLEAKMNGTKLSVANGKEIHIGDDEVTATKQSNCCTN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0476 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Lal25g0476 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Lal25g0476 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Lal25g0476 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Lal25g0476 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Lal25g0476 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 189 IPR027417 -
Lal25g0476 217 ProSiteProfiles small GTPase Ras family profile. 7 217 IPR001806 GO:0003924|GO:0005525
Lal25g0476 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Lal25g0476 217 SMART ras_sub_4 10 176 - -
Lal25g0476 217 Gene3D - 5 215 IPR027417 -
Lal25g0476 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Lal25g0476 217 SMART rab_sub_5 13 176 - -
Lal25g0476 217 TIGRFAM small_GTP: small GTP-binding protein domain 11 166 IPR005225 GO:0005525
Lal25g0476 217 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Lal25g0476 217 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 216 - -
Lal25g0476 217 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Lal25g0476 217 PANTHER DRAB5-RELATED 1 216 - -
Lal25g0476 217 SMART ran_sub_2 18 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0476 Lal-Chr25 3283677 3287117 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0476 K07976 - gmx:100815793 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0476 25 3283677 3287117 Lal25g0476 25 3283677 3287117 ECH