Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0473 ATGGCTGAGGGACTCGTTCTCCGCGGTACCTTACGCGCCCACACCGACGAAGTAACCGCAATCGCCACCCCAATCGATAACTCTGACATGATCGTCTCCTCCTCCCGCGACAAATCCATCGTCGTCTGGCACCTTACCAAGGAGGACCGAACCTACGGTGTCCCCCGCCGCCGTCTCACCGGCCACTCTCATTTCGTCCAGGATGTTGTCCTCTCATCTGACGGTCAATTCGCACTCTCTGGCTCCTGGGACGGTGAACTCCGCCTGTGGGATCTTGCCTCCGGCGTCTCCACTCGCCGCTTCGTTGGACACAATAAGGATGTGCTTTCTGTTGCTTTCTCGGTTGATAACCGTCAGATCGTGTCGGCTTCTCGTGACCGTACGATTAAGCTGTGGAACACTCTTGGTGAGTGTAAGTATACTATATCTGATGGTGCTGATGGACATAATGATTGGGTTTCGTGTGTGAGGTTCAGTCCCAATAACCTTCAGCCAACCATTGTTTCTGCCTCTTGGGATAAGACTGTGAAGGTTTGGAACTTGGCGAATTGCAAGCTGAGGAACACCCTAGCAGGACACAATGGGTATGTGAACACTGTGGCAGTTTCACCTGATGGGTCGCTTTGTGCCAGCGGTGGTAAAGATGGGGTGATTTTGCTGTGGGATTTGGCAGAAGGGAAGAAGCTGTATTCACTTGATGCAGGTTCTATTATTCATTCTTTGTGCTTCAGTCCTAATAAGTACTGGCTCTGTGCTGCTACAGAGCAGGGTATTAAGATATGGGATTTGGAGAGCAAGAGCATTGTGGAGGATCTGAAGGTTGATCTTAAGTCCGAAGCTGAAGCCACTACTGGTGGAATTGCAAACAAAAAGAAGGTTATCTACTGCACAAGTTTGAACTGGAGCGCCGATGGAAGCACATTGTTCAGTGGTTACACTGATGGTGTGATCAGAGTTTGGGGGATTGGGCGAGGCTTCTAA 981 0.5056 MAEGLVLRGTLRAHTDEVTAIATPIDNSDMIVSSSRDKSIVVWHLTKEDRTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLASGVSTRRFVGHNKDVLSVAFSVDNRQIVSASRDRTIKLWNTLGECKYTISDGADGHNDWVSCVRFSPNNLQPTIVSASWDKTVKVWNLANCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGSIIHSLCFSPNKYWLCAATEQGIKIWDLESKSIVEDLKVDLKSEAEATTGGIANKKKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRGF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 326 IPR001680 GO:0005515
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 326 - -
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Lal25g0473 326 SMART WD40_4 277 321 IPR001680 GO:0005515
Lal25g0473 326 SMART WD40_4 94 133 IPR001680 GO:0005515
Lal25g0473 326 SMART WD40_4 135 180 IPR001680 GO:0005515
Lal25g0473 326 SMART WD40_4 225 262 IPR001680 GO:0005515
Lal25g0473 326 SMART WD40_4 52 91 IPR001680 GO:0005515
Lal25g0473 326 SMART WD40_4 4 44 IPR001680 GO:0005515
Lal25g0473 326 SMART WD40_4 183 222 IPR001680 GO:0005515
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 227 - -
Lal25g0473 326 SUPERFAMILY WD40 repeat-like 7 323 IPR036322 GO:0005515
Lal25g0473 326 ProSitePatterns Trp-Asp (WD) repeats signature. 209 223 IPR019775 -
Lal25g0473 326 CDD WD40 7 320 - -
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Lal25g0473 326 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 324 IPR045223 GO:0015935|GO:0043022
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Lal25g0473 326 ProSitePatterns Trp-Asp (WD) repeats signature. 167 181 IPR019775 -
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 189 IPR001680 GO:0005515
Lal25g0473 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 231 IPR001680 GO:0005515
Lal25g0473 326 Gene3D - 4 324 IPR015943 GO:0005515
Lal25g0473 326 PANTHER BNAA06G12310D PROTEIN 1 324 - -
Lal25g0473 326 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Lal25g0473 326 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Lal25g0473 326 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Lal25g0473 326 PRINTS G protein beta WD-40 repeat signature 209 223 IPR020472 -
Lal25g0473 326 Pfam WD domain, G-beta repeat 188 222 IPR001680 GO:0005515
Lal25g0473 326 Pfam WD domain, G-beta repeat 297 320 IPR001680 GO:0005515
Lal25g0473 326 Pfam WD domain, G-beta repeat 137 180 IPR001680 GO:0005515
Lal25g0473 326 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Lal25g0473 326 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Lal25g0473 326 Pfam WD domain, G-beta repeat 228 262 IPR001680 GO:0005515
Lal25g0473 326 Pfam WD domain, G-beta repeat 98 133 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0473 Lal-Chr25 3260388 3263061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0473 7 261 Acyl Lipid Metabolism Gene Families AT3G18860 31.801 4.27e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0473 K14753 - gmx:100778205 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0473 25 3260388 3263061 Lal25g0473 25 3260388 3263061 ECH