Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0468 ATGGCGGCAATCGCAGTTCCTCAACCTCGATCTTCCAAGACTGAATCCTACGTCGATAACAAGCGCAAGGAGGATATACGCCATGTTAACATCGCCGCCGCGAAATCCGTCGCCGACGCCGTTCGCACCAGCCTTGGCCCCAAGGGTATGGACAAGATGATCTCCACCTCTTCTGGCGACGTTATCATTACAAACGACGGTGCCACCATCCTCAATAACATGCAACTCCTCCAACCCGCCGCGAAGATGCTCGTCGACCTTTCGAAATCGCAAGACGCCGCGGCCGGAGATGGAACCACCACGGTTGTTGTGATTGCTGGTGCTTTGCTTGACAGCTGCCGCGTCCTCCTCACTCGTGGTATCCACCCTACCGTCGTCTCTGATTCCCTCCACAAAGCCGCTGTCAAAGCCACCGACATTCTCGCCGCCATGGCGGTTCCCGTTGAACTTTCCGATCGCGAATCGCTCGTGAAATCCGCAAGCACTTCGCTTAACAGTAAGGTCGTTAGTCAGTACTCCACACTCCTTGCTCCCCTCGCCGTGGACGCTGTCACCTCTGTTGTGGACCCGGAGAAACCCGAGCAGGTAGATCTTCGTGATATTAGGATTGTGAAGAAGCTCGGCGGCACCGTCGATGATACCGAGCTAGTGAAGGGTTTGTGCTTTGATAAGAAGGTAAGTCATGCTGCTGGTGGACCTACCAGAATGGAAAATGCTAAAATTGGTGTGATTCAGTTTCAGATTTCGCCGCCAAAAACCGATATCGAACAGAGTATTGTAGTGTCTGATTATTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTATATTCTTGGTATGATTAAGAAGATTAAAGCAACTGGTTGTAATGTGCTTTTGATTCAAAAGAGTATTCTGAGGGATGCTGTTACTGATTTGTCTTTGCATTATCTTGCTAAGGCTAAGATTTTGGTGATTAAGGATGTGGAGAGAGACGATATTGAATTTATTACTAAGACTTTGAATTGTTTGCCTATAGCGAATATAGAGCATTTCCGGGCCGAGAAGTTGGGTCATGCTGATCTTGTGGAGGAGGTATCTTTGGGAGATGGAGGGAAGATTGTGAAGATTACCGGGATTAAGGATATGGGGAGGACCACGACTGTGCTTGTTCGTGGATCGAACCAGTTGGTGATTGATGAGGCTGAGAGGAGTTTGCATGATGCTTTGTGTGTTGTGAGGTGTTTGGTGAGTAAGAGGTTTTTGATTGCTGGAGGAGGTGCACCGGAGATTGAGCTGTCTAGGCAATTAGGTGCTTGGGCTAAGGTCTTGCATGGGATGGAGGGTTACTGTATTCGGGCTTTTGCTGAGTCGCTTGAAGTCATTCCTTATACTCTGGCTGAGAATGCGGGGTTGAACCCGATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCACAGGGTGAGATTAATGCTGGAATCAATGTGAGGAAGGGTCAGATTACTAACATCTTGGAGGAGAACGTGGTGCAGCCACTGTTGGTCAGTACAAGTGCTATCACCTTAGCATCAGAATGTGTTCGGATGATTTTGAAGATCGATGATATTGTAACCGTGAGAAGGCTACATAGGCTGGGAAAGTGTCCAATCTCAAAGAATTCAAAGCTAGATGCTTTGTAA 1662 0.4807 MAAIAVPQPRSSKTESYVDNKRKEDIRHVNIAAAKSVADAVRTSLGPKGMDKMISTSSGDVIITNDGATILNNMQLLQPAAKMLVDLSKSQDAAAGDGTTTVVVIAGALLDSCRVLLTRGIHPTVVSDSLHKAAVKATDILAAMAVPVELSDRESLVKSASTSLNSKVVSQYSTLLAPLAVDAVTSVVDPEKPEQVDLRDIRIVKKLGGTVDDTELVKGLCFDKKVSHAAGGPTRMENAKIGVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDDIEFITKTLNCLPIANIEHFRAEKLGHADLVEEVSLGDGGKIVKITGIKDMGRTTTVLVRGSNQLVIDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCIRAFAESLEVIPYTLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLASECVRMILKIDDIVTVRRLHRLGKCPISKNSKLDAL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0468 553 Gene3D - 34 531 IPR027413 -
Lal25g0468 553 SUPERFAMILY GroEL-intermediate domain like 152 412 IPR027410 -
Lal25g0468 553 Gene3D GroEL 218 378 IPR027409 -
Lal25g0468 553 SUPERFAMILY GroEL equatorial domain-like 20 532 IPR027413 -
Lal25g0468 553 ProSitePatterns Chaperonins TCP-1 signature 3. 91 99 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lal25g0468 553 PANTHER CHAPERONIN 13 532 IPR017998 GO:0140662
Lal25g0468 553 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT DELTA 13 532 - -
Lal25g0468 553 CDD TCP1_delta 19 533 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lal25g0468 553 PRINTS Tailless complex polypeptide 1 (chaperone) signature 39 55 IPR017998 GO:0140662
Lal25g0468 553 PRINTS Tailless complex polypeptide 1 (chaperone) signature 61 79 IPR017998 GO:0140662
Lal25g0468 553 PRINTS Tailless complex polypeptide 1 (chaperone) signature 91 110 IPR017998 GO:0140662
Lal25g0468 553 PRINTS Tailless complex polypeptide 1 (chaperone) signature 382 404 IPR017998 GO:0140662
Lal25g0468 553 PRINTS Tailless complex polypeptide 1 (chaperone) signature 416 428 IPR017998 GO:0140662
Lal25g0468 553 SUPERFAMILY GroEL apical domain-like 213 387 IPR027409 -
Lal25g0468 553 Pfam TCP-1/cpn60 chaperonin family 37 532 IPR002423 GO:0005524
Lal25g0468 553 Gene3D - 147 414 IPR027410 -
Lal25g0468 553 TIGRFAM chap_CCT_delta: T-complex protein 1, delta subunit 19 533 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lal25g0468 553 ProSitePatterns Chaperonins TCP-1 signature 1. 42 54 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0468 Lal-Chr25 3235994 3238553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0468 209 428 EF-hand Containing Proteins AT3G14270 24.473 1.04e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0468 K09496 - gmx:100786888 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0468 25 3235994 3238553 Lal25g0468 25 3235994 3238553 ECH