Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0320 ATGGCTATGCACACTTCACTTTCTCTCCGAACTCCCTCTCCCTCACTTTCCTTCTCCTCAAAACTCCCCTTCACCTCCGCCTTCTCCCTCCGCCCCTTCCCCCGCCACCACCACCACCACCACCGTAATCTCGTCTTCATTGTCTCTGCCTCCATCAACGCCAAGCCCACTGTACTCGTCGCTGAAAAGCTCGGTGAAGCGGGTCTTCTCCTTCTCAAAGACTTCGCCAACGTGGATTGTTCATACAATCTCACACCTGAGGAGCTTTGCACTAAGATCTCACTCTGTGATGCTCTTATCGTTCGTAGCGGAACCAAGGTGTCACGTGATGTGTTTGAATCTTCTAATGGGAGACTCAAGGTTGTTGGAAGAGCTGGTGTTGGAATCGATAATGTTGATCTTGCTGCCGCCACTGAGTTCGGTTGTTTGGTTGTTAATGCTCCTACTGCTAACACCGTTGCTGCCGCGGAACACGGTATAGCACTCTTGGCTGCTATGGCTAGGAACGTTGCTCAGGCTGATGCGTCTGTTAAATCTGGGAAATGGCTGAGAAATAAATATGTGGGAGTTTCCCTGGTTGGGAAAACACTTGCTGTCTTGGGATTTGGAAAGGTTGGTTCCGAAGTTGCTCGTCGTGCAAAGGGACTTGGTATGCATGTCATTGCACATGACCCATATGCTCCTGCAGACCGTGCTCGTGCCATTGGTGTGGATCTTGTGAGTTTTGATGAGGCCATTTCTACCGCAGATTTCATTTCTTTGCACATGCCTCTTACGCCTTCTACTGCGAAGGTTCTCAATGATGAGACTTTTGCCAAGGTGAAGAAGGGAGTTAGGATTGTCAATGTTGCCCGTGGAGGAGTCATTGATGAGGATGCTCTTGTTAGGGCTCTGGATGCTGGAATTGTAGCTCAGGCGGCACTTGATGTTTTCACAGAGGAGCCACCATCAAAAGACAGCAAGTTGATTCTGCATGAGCAAGTTATTGCAACACCTCATCTTGGTGCAAGTACCATGGAAGCCCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTTGTTGGGGCTTTGAGAGGGGAGCTTGCTGCTACTGCAGTCAATGCACCAATGGTTCCAGCTGAGGTGTTAGCAGAGTTGAAACCATATGTTGATCTTGCTGAACAACTGGGTAGGCTGGCTGTCCAGTTAGTAGCCGGAGGAAGCGGTGTAAAAACAGTTAAAGTGACTTATGCTTCTTCAAGGGCCCCTGATGATCTTGACACTCGTCTCCTTCGTGCTATGATAACCAAGGGTCTGATTGAGCCCATATCCAGTGTTTTTGTGAACTTGGTCAATGCTGATTTCACTGCTAAACAAAGAGGGCTCAGGATAACTGAGGAGAGGGTTATTCTTGATGGTTCACCTGAAAATCCGCTTGAATTCATCCAGGTCCAGATTGCTAATGTGGAATCTCGATTTGCTAGCGCCATATCAGATTCTGGAGAGATTAAGGTTGAGGGTCGAGTGAAAGACGGTATCCCACATCTGACAAGGGTTGGATCTTTTGAAGTTGATGTGAGCTTGGAAGGTAGCATTATACTCTGCAGGCAGGTAGATCAACCTGGCATGATTGGAAAGGTTGGGAGCATTTTGGGTCAGGAGAATATTAATGTCAGCTTCATGAGTGTTGGAAGGATTGCTCCACGGAAGCAAGCTGTAATGGCAATTGGGGTGGATGATCAACCTAACAAAGAAGTTTTGAAGAAAATCGGAGATATTCCTGCGGTTGAAGAGCTCGTTTTTCTTAAGCTGCAAGACAAAGTTGTTACTTAA 1812 0.4763 MAMHTSLSLRTPSPSLSFSSKLPFTSAFSLRPFPRHHHHHHRNLVFIVSASINAKPTVLVAEKLGEAGLLLLKDFANVDCSYNLTPEELCTKISLCDALIVRSGTKVSRDVFESSNGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKSGKWLRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAISTADFISLHMPLTPSTAKVLNDETFAKVKKGVRIVNVARGGVIDEDALVRALDAGIVAQAALDVFTEEPPSKDSKLILHEQVIATPHLGASTMEAQEGVAIEIAEAVVGALRGELAATAVNAPMVPAEVLAELKPYVDLAEQLGRLAVQLVAGGSGVKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERVILDGSPENPLEFIQVQIANVESRFASAISDSGEIKVEGRVKDGIPHLTRVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGQENINVSFMSVGRIAPRKQAVMAIGVDDQPNKEVLKKIGDIPAVEELVFLKLQDKVVT 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0320 603 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 58 367 IPR006139 GO:0016616|GO:0051287
Lal24g0320 603 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 274 290 IPR029753 -
Lal24g0320 603 ProSiteProfiles ACT domain profile. 525 603 IPR002912 -
Lal24g0320 603 SMART AdoHcyase_NAD_2 185 339 IPR015878 -
Lal24g0320 603 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 55 184 - -
Lal24g0320 603 Gene3D - 60 360 - -
Lal24g0320 603 CDD ACT_3PGDH-xct 526 597 - -
Lal24g0320 603 SUPERFAMILY Serine metabolism enzymes domain 373 519 IPR029009 -
Lal24g0320 603 SUPERFAMILY ACT-like 515 594 IPR045865 -
Lal24g0320 603 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 378 481 IPR045626 -
Lal24g0320 603 Pfam ACT domain 525 587 IPR002912 -
Lal24g0320 603 PANTHER FORMATE DEHYDROGENASE 1 22 592 - -
Lal24g0320 603 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 22 592 - -
Lal24g0320 603 CDD PGDH_4 58 360 - -
Lal24g0320 603 Gene3D - 372 523 IPR029009 -
Lal24g0320 603 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 160 335 IPR006140 GO:0051287
Lal24g0320 603 Gene3D - 524 597 - -
Lal24g0320 603 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 245 267 IPR029753 -
Lal24g0320 603 Gene3D - 151 333 - -
Lal24g0320 603 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 336 IPR036291 -
Lal24g0320 603 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 197 224 IPR029752 -
Lal24g0320 603 TIGRFAM PGDH: phosphoglycerate dehydrogenase 58 596 IPR006236 GO:0004617|GO:0006564
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0320 Lal-Chr24 2253553 2256943 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0320 K00058 - gmx:100808771 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0320 24 2253553 2256943 Lal24g0320 24 2253553 2256943 ECH