Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0215 ATGGATATAGATCCTCCGTCCAACGGCAACAACAACAACAACACCACCACCACCACCACCGGAACCACCCTCAACTCCTCTCTTCCTTCATCCTACAATCCTCACCAATTCACCGAATCTCTCAAGCTCGAACACCAGTTCTTGAGGGTCCCTTTCGAGCACTTCAAGAAGACAATCCGAGCTAACCACCGCTTCCTCGAGAAAGAGATGTTTGCTGTCATCTCCGGCGTCAACAGCGCTGCTTCCGCCGACTTATCTCGTGACGATGCCGTCAATCACCTTAACTCCCTCATCTTCCGCCTTCAAGGCCTCAAGAGGAAGTTAGAAGAAGGAAATCGGGCAGAACAGATTCAAGCGCAGAGGTGTCGTGTACGCGTTGATCACTTGGAATCTGCATACGCAGAAGATATGTCAGAATGGAATAACACTCGCTTGAACCGAATTCTTGTTGATTACATGTTGAGGATGTCATATTTTGAAACTGCAGTGAAACTTGCTGAATGCAGCAACATACAGGATCTTGTTGACATTGATATATTCCAAGAAGCAAAAATGGTTATTGATGCTTTGCAAAATAAGGACGTTTCACCTGCCCTTGCATGGTGTGCCGAAAACAAATCAAGGCTGAAAAAGTCCAAGAGCAAATTGGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTGGTAAGAGCTGAGAACAGTTTGGGAGCCATTGCATATGCTAGGAAATATCTTGCGCCATGGGGAGCCACCCACATGAAAGAATTGCAGCGAGTCATTGCTACACTAGCTTTTAAACGATGTACTGAATATGCCACATACAAGGTCTTATTTGAAGCTAAGCAGTGGGATATTCTAGTGGACCAATTCAGACAGGAATTCTGCAAGTTATATGGCATGACTTTAGAGCCTTTGCTTAACATCTATCTGCAAGCTGGCCTTTCTGCCCTCAAGACTCCGTTTCCGGAGAGAAATGTAGTTTCTTTAAGCCAAATGCCTATGATGTGCTTTATCATTCTTGCATACATAAATCTTAAATCTTACCCATTATTACTTTTCATGGTTGGCATTTTGTCTGTGTTGGTATATGATTGCACAAAAGAGGACCCTCTATCACAAGAGTCATTCCGCACACTTGCCCTGCCACTACCTTATTCGAAGCAGCATCACTCAAAGCTTGTTTGCTATATAACTAAGGAGATAATGGACACTGAGAATCCACCCCAAGTCTTGCCCAACGGATATGTTTATAGCACTAAGGCTCTCCAAGAGATGGCTAAGAAAAATAATGGTAGAATCACATGCCCAAGAACAGGTTTTGTTTGCAGCTATTCAGAACTGATCAAGGCATATATTTCATAA 1362 0.4347 MDIDPPSNGNNNNNTTTTTTGTTLNSSLPSSYNPHQFTESLKLEHQFLRVPFEHFKKTIRANHRFLEKEMFAVISGVNSAASADLSRDDAVNHLNSLIFRLQGLKRKLEEGNRAEQIQAQRCRVRVDHLESAYAEDMSEWNNTRLNRILVDYMLRMSYFETAVKLAECSNIQDLVDIDIFQEAKMVIDALQNKDVSPALAWCAENKSRLKKSKSKLEFQLRLQEFIELVRAENSLGAIAYARKYLAPWGATHMKELQRVIATLAFKRCTEYATYKVLFEAKQWDILVDQFRQEFCKLYGMTLEPLLNIYLQAGLSALKTPFPERNVVSLSQMPMMCFIILAYINLKSYPLLLFMVGILSVLVYDCTKEDPLSQESFRTLALPLPYSKQHHSKLVCYITKEIMDTENPPQVLPNGYVYSTKALQEMAKKNNGRITCPRTGFVCSYSELIKAYIS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0215 453 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 38 453 IPR045098 GO:0004842|GO:0043161
Lal24g0215 453 Pfam CTLH/CRA C-terminal to LisH motif domain 180 319 IPR024964 -
Lal24g0215 453 MobiDBLite consensus disorder prediction 1 31 - -
Lal24g0215 453 ProSiteProfiles LIS1 homology (LisH) motif profile. 141 173 IPR006594 GO:0005515
Lal24g0215 453 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 179 236 IPR006595 -
Lal24g0215 453 SUPERFAMILY RING/U-box 388 451 - -
Lal24g0215 453 ProSiteProfiles Gid-type RING finger profile. 365 438 IPR044063 GO:0061630
Lal24g0215 453 CDD RING-Ubox_Emp 391 439 - -
Lal24g0215 453 SMART ctlh 179 236 IPR006595 -
Lal24g0215 453 PANTHER E3 UBIQUITIN-PROTEIN TRANSFERASE MAEA 38 453 IPR027714 GO:0043161|GO:0061630
Lal24g0215 453 SMART toby_final6 232 326 IPR013144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0215 Lal-Chr24 1560625 1565585 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0215 K18624 K14399 gmx:100805248 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0215 24 1560625 1565585 Lal24g0215 24 1560625 1565585 ECH